[Eagle-i-admins] New process and data migration issues & clarification of properties [2.0-MS2.14]

Tolmie, David A dtolmie at fhcrc.org
Thu Aug 8 13:21:59 EDT 2013


Hi folks,

I'm back to trying to upgrade eagle-I, and I'm receiving the same kind of output as before when running the data migration script.  See attached.  The script claims to have run successfully, but shows command usage info as if underlying commands were not called correctly.  Nothing was written to any of the logs.

I'm doing this with the repository and data migrations tools from 2.0-MS2.16 this time.  I made certain there were no old instances of the eagle-i-datatools-datamanagement.jar before downloading the jar for the newest release.

Any thoughts or suggestions?

Thanks,

-Dave

________________________________
David Tolmie
Systems Librarian
Arnold Library | Fred Hutchinson Cancer Research Center | Seattle, WA
dtolmie at fhcrc.org<mailto:dtolmie at fhcrc.org>  |  tel 206.667.6852 |  fax 206.667.4737
[Description: Description: Description: Description: AL-Logo-color]<http://library.fhcrc.org/>


From: <Cheng>, "Cheng, Sophia" <Sophia_Cheng at hms.harvard.edu<mailto:Sophia_Cheng at hms.harvard.edu>>
Reply-To: "eagle-i-admins at open.med.harvard.edu<mailto:eagle-i-admins at open.med.harvard.edu>" <eagle-i-admins at open.med.harvard.edu<mailto:eagle-i-admins at open.med.harvard.edu>>
Date: Tuesday, July 23, 2013 4:51 PM
To: David Tolmie <dtolmie at fhcrc.org<mailto:dtolmie at fhcrc.org>>, "ross.davis at Vanderbilt.Edu<mailto:ross.davis at Vanderbilt.Edu>" <ross.davis at Vanderbilt.Edu<mailto:ross.davis at Vanderbilt.Edu>>, "angel at itmat.upenn.edu<mailto:angel at itmat.upenn.edu>" <angel at itmat.upenn.edu<mailto:angel at itmat.upenn.edu>>, "fcoldren at mail.med.upenn.edu<mailto:fcoldren at mail.med.upenn.edu>" <fcoldren at mail.med.upenn.edu<mailto:fcoldren at mail.med.upenn.edu>>, "sukie at dartmouth.edu<mailto:sukie at dartmouth.edu>" <sukie at dartmouth.edu<mailto:sukie at dartmouth.edu>>
Cc: "Ciriello, Marc" <Marc_Ciriello at hms.harvard.edu<mailto:Marc_Ciriello at hms.harvard.edu>>, "Bourges, Daniela" <Daniela_Bourges at hms.harvard.edu<mailto:Daniela_Bourges at hms.harvard.edu>>, "Cole, Julian C" <Julian_Cole at hms.harvard.edu<mailto:Julian_Cole at hms.harvard.edu>>, "Neiman, David" <David_Neiman at hms.harvard.edu<mailto:David_Neiman at hms.harvard.edu>>, "eagle-i-admins at open.med.harvard.edu<mailto:eagle-i-admins at open.med.harvard.edu>" <eagle-i-admins at open.med.harvard.edu<mailto:eagle-i-admins at open.med.harvard.edu>>
Subject: New process and data migration issues & clarification of properties [2.0-MS2.14]

Now, regarding some of the issues that have been encountered:
(1) Some of you have reported having issues running the data-migration.sh for the latest release, 2.0-MS2.14.  This issue manifests with notification of incorrect/missing parameters during the execution of the script, but the script does not fail.  The output looks similar to the attached file.  I have been unable to reproduce the error using the files that were mentioned in the initial email:
Datamangement Toolkit -  http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-datatools-datamanagement/
Repository -  http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-repository-dist/

Not everyone has run into this problem, so I'm wondering if I could ask those of you who have had problems to remove your existing eagle-i-datatools-datamanagement.jar, re-download the jar and try the script again.
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