[Eagle-i-admins] Getting Sparqler errors, and "LocalNode" exceptions in API

[John Locke]

Hi,

I've been assisting FredHutch with some updates to their eagle-i node, 
and am hitting two issues:

1. Sparqler. As best I can tell, we did not have Sparqler 
configured/working previously. We updated the eagle-i node to 3.0.4 last 
fall, and now going from there to 3.5.0, and I read all the notes about 
needing to configure Sparqler. I followed all the steps here: 
https://open.med.harvard.edu/wiki/display/eaglei/Public+SPARQL+Endpoint 
... all succeeded except for the final step, #11, which failed with this 
error, followed by the same HTML error page visible at 
https://eagle-i.fhcrc.org/sparqler/query/ .

 > FAILED to create metadata for user, HTTP status=500


2. We're trying to use the API to post content into eagle-i from Drupal, 
but we're getting a similar HTTP 500 error:

> Jun 01, 2015 4:24:56 PM com.sun.jersey.spi.container.ContainerResponse 
> mapMappableContainerException
> SEVERE: The RuntimeException could not be mapped to a response, 
> re-throwing to the HTTP container
> org.springframework.beans.factory.NoSuchBeanDefinitionException: No 
> bean named 'localNode' is defined
> at 
> org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeanDefinition(DefaultListableBeanFactory.java:509)
> at 
> org.springframework.beans.factory.support.AbstractBeanFactory.getMergedLocalBeanDefinition(AbstractBeanFactory.java:1041)
> at 
> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:273)
> at 
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
> at 
> org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048)
> at 
> org.eaglei.datatools.services.EIExternalResourceService.(EIExternalResourceService.java:90)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at 
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
> at 
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
<snip> (can provide full stack trace if useful).

We were getting this in 3.0.4 too...

I've also attached the body of a sample HTTP POST we're sending, that's 
generating this error.


What is the 'localNode' in this error? I'm wondering if I overlooked 
some critical configuration step somewhere along the upgrade?

Cheers,
John Locke
http://www.freelock.com

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{
  "instanceEntity": {
    "uri": {
      "value": ""
    },
    "label": "Pilot and Feasibility Program Grants"
  },
  "specificTypeUri": {
    "value": "http://purl.obolibrary.org/obo/ERO_0000005"
  },
  "rootType": {
    "value": "http://purl.obolibrary.org/obo/ERO_0000005"
  },
  "foreignKey": "8734",
  "source": "Fred Hutchinson Cancer Research Center",
  "linkedResources": {
    "http://purl.obolibrary.org/obo/ERO_0000021": [
      {
        "instanceEntity": {
          "uri": {
            "value": "http://eagle-i.fhcrc.org/i/00000140-0735-dc32-7ab9-126580000000"
          },
          "label": "Beverly Torok-Storb"
        },
        "specificTypeUri": {
          "value": "http://xmlns.com/foaf/0.1/Person"
        },
        "rootType": {
          "value": "http://xmlns.com/foaf/0.1/Person"
        },
        "foreignKey": "8733",
        "source": "Fred Hutchinson Cancer Research Center",
        "linkedResources": {},
        "textProperties": {
          "http://purl.obolibrary.org/obo/ERO_0000042": [
            "Beverly"
          ],
          "http://purl.obolibrary.org/obo/ERO_0000049": [
            "Torok-Storb"
          ],
          "http://purl.obolibrary.org/obo/ERO_0000041": [
            "btorokst at fredhutch.org"
          ]
        }
      }
    ],
    "http://purl.obolibrary.org/obo/ERO_0000390": [
      {
        "instanceEntity": {
          "uri": {
            "value": "http://eagle-i.fhcrc.org/i/00000140-6469-8788-7845-9b5680000000"
          },
          "label": "CCEH - Administration"
        },
        "specificTypeUri": {
          "value": "http://vivoweb.org/ontology/core#CoreLaboratory"
        },
        "rootType": {
          "value": "http://xmlns.com/foaf/0.1/Organization"
        },
        "foreignKey": "8732",
        "source": "Fred Hutchinson Cancer Research Center",
        "linkedResources": {},
        "textProperties": {
          "http://purl.obolibrary.org/obo/ERO_0000041": [
            "btorokst at fredhutch.org"
          ],
          "http://eagle-i.org/ont/app/1.0/resource_description": [
            "The CCEH Administrative Core provides scientific and budgetary oversight for all CCEH activities. This includes, in addition to the Pilot and Feasibility Program, an Enrichment Program that supports outside speakers, high school summer internships, and short-term on-sight training opportunities for NIDDK-funded trainees from anywhere in the US."
          ],
          "http://purl.obolibrary.org/obo/ERO_0000480": [
            "http://sharedresources.fhcrc.org/core-facilities/cceh-administration"
          ]
        }
      }
    ]
  },
  "textProperties": {
    "http://eagle-i.org/ont/app/1.0/resource_description": [
      "The Pilot and Feasibility Studies Program, funded by the CCEH grant, supports 5-7 one-year grants of $20,000 each. The focus of the grants is generally, but not exclusively hematology-related research. Applications that propose to use one or more of the CCEH cores are especially welcomed."
    ],
    "http://purl.obolibrary.org/obo/ERO_0000480": [
      "http://sharedresources.fhcrc.org/services/pilot-and-feasibility-program-grants"
    ]
  }
}