[Eagle-i-admins] Eagle-i-admins Digest, Vol 22, Issue 1

[Sukdith Punjasthitkul]

Reinstalling Institution application did not fix the issue; I'm getting the same error messages, which seems like a memory leak issue. We use the Institution application, so unless I can figure out a solution within the next day or so, we're going to rollback our server to 3.4.2. 

--sukie--





> On Jul 8, 2015, at 12:08 PM, Lease, Joshua <jlease at hmc.psu.edu> wrote:
> 
> I also ran into an issue during the update. However, my log includes exceptions before SEVERE: Error listenerStart. I'm not sure if the issues are related. You can see my log file in an earlier post to the admin group, but I still have not found a solution.
> 
> 
> On 7/8/15, 12:00 PM, "eagle-i-admins-bounces at open.med.harvard.edu on behalf of eagle-i-admins-request at open.med.harvard.edu" <eagle-i-admins-bounces at open.med.harvard.edu on behalf of eagle-i-admins-request at open.med.harvard.edu> wrote:
> 
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>> Today's Topics:
>> 
>>  1. Can't install Institution when updating to 3.7.2
>>     (Sukdith Punjasthitkul)
>> 
>> 
>> ----------------------------------------------------------------------
>> 
>> Message: 1
>> Date: Wed, 8 Jul 2015 15:16:16 +0000
>> From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
>> To: eagle-i-admins <eagle-i-admins at open.med.harvard.edu>
>> Subject: [Eagle-i-admins] Can't install Institution when updating to
>> 	3.7.2
>> Message-ID: <A10CA7C0-B742-40C8-84DC-B1FE0486399B at dartmouth.edu>
>> Content-Type: text/plain; charset="iso-8859-1"
>> 
>> eagle-i sys admins, 
>> 
>> I've updated our eagle-i node to 3.7.2. Repository and SWEET applications are working, but I'm running into issues with the Institution app: 
>> 
>>> HTTP Status 404 -
>>> 
>>> type Status report
>>> 
>>> message
>>> 
>>> description The requested resource () is not available.
>> 
>> 
>> I looked at the catalina logs and I saw this: 
>> 
>>> Jul 08, 2015 10:04:42 AM org.apache.catalina.loader.WebappClassLoader validateJarFile
>>> INFO: validateJarFile(/data/eagle-i/apache-tomcat-6.0.33/webapps/institution/WEB-INF/lib/javax.servlet-3.0.0.v201112011016.jar) - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: javax/servlet/Servlet.class
>>> Jul 08, 2015 10:05:06 AM org.apache.catalina.core.StandardContext start
>>> SEVERE: Error listenerStart
>>> Jul 08, 2015 10:05:06 AM org.apache.catalina.core.StandardContext start
>>> SEVERE: Context [/institution] startup failed due to previous errors
>>> Jul 08, 2015 10:05:06 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
>>> SEVERE: The web application [/institution] appears to have started a thread named [searcherExecutor-6-thread-1] but has failed to stop it. This is very likely to create a memory leak.
>>> Jul 08, 2015 10:05:06 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
>>> SEVERE: The web application [/institution] appears to have started a thread named [Thread-10] but has failed to stop it. This is very likely to create a memory leak.
>>> Jul 08, 2015 10:05:06 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
>>> SEVERE: The web application [/institution] appears to have started a thread named [Thread-11] but has failed to stop it. This is very likely to create a memory leak.
>>> 
>> 
>> 
>> Has anyone else run into issues installing Institution app when updating to 3.7.x? I'm going to try and reinstall Institution app again. 
>> 
>> --sukie--
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>>> On Jun 29, 2015, at 3:14 PM, Sophia K Cheng <sophia_cheng at hms.harvard.edu> wrote:
>>> 
>>> Dear eagle-i sys admins,
>>> 
>>> The long awaited for documentation for the recent releases is now available.  Please note that there is no version 3.6.  There were severe performance issues in 3.6. Instead of stretching our release schedule, we decided to call 3.6 done and not releasable and move onto 3.7.x.
>>> 
>>> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes
>>> https://open.med.harvard.edu/wiki/display/eaglei/3.7.2+Release+Notes+(Current+Release)
>>> 
>>> Notable changes in these versions are:
>>> * solr library upgraded to 4.10.2
>>> * functional fixes for Catalyst & Experimental API
>>> * the url for navigation has changed
>>> 
>>> Please let us know if you have any questions or problems.  Thank you for your patience.
>>> 
>>> Cheerios,
>>> Sophia
>>> -- 
>>> Sophia K. Cheng
>>> Technical Lead
>>> Harvard Catalyst | eagle-i
>>> email:  sophia?_cheng at hms.harvard.edu
>>> skype: sophia.k.cheng
>>> 
>>> Harvard Medical School
>>> Harvard Catalyst | The Harvard Clinical and Translational Science Center
>>> Landmark Center, Suite 504 West
>>> 401 Park Drive
>>> Boston, MA 02215
>>> 
>>> _______________________________________________
>>> Eagle-i-admins mailing list
>>> Eagle-i-admins at open.med.harvard.edu
>>> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>> 
>> 
>> 
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>> End of Eagle-i-admins Digest, Vol 22, Issue 1
>> *********************************************
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