[Eagle-i-admins] data migration for 2.0-MS3.0x

[Todd Hall]

I successfully upgraded from 2.14 to 3.07 (I don't think this is a deal
breaker since MS3.04 is the official release) on a test system.  When I run
the data-migration.sh file, I get the following in the log and on the
screen.  The ontology is version 1.8.4.  When I ran the upgrade.sh shell, it
gave no errors or warnings

 

[root at eagle-i-test conf]# bash /opt/eaglei/repo/etc/data-migration.sh -u
admin -p xxxxxxx -r https://lcoalhost:8443


 Java info:

/usr/java/jdk1.7.0_17/bin/java

java version "1.7.0_17"

Java(TM) SE Runtime Environment (build 1.7.0_17-b02)

Java HotSpot(TM) 64-Bit Server VM (build 23.7-b01, mixed mode)

 

using classpath :
/opt/eaglei/repo/etc:/opt/eaglei/repo/etc/eagle-i-datatools-datamanagement.j
ar

 

 

***** There are no special procedures for this release.

 

***** Standard data migration procedures

 

2014-07-25 10:39:41,518 WARN
org.eaglei.services.repository.RepositoryHttpConfig - The url for a
repository can not be null.

2014-07-25 10:39:41,520 ERROR
org.eaglei.datatools.datamanagement.command.CommandUtils - Bulk command did
not proceed.

org.eaglei.services.repository.RepositoryProviderException: The url for the
repository is invalid.

        at
org.eaglei.services.repository.RepositoryHttpConfig.<init>(RepositoryHttpCon
fig.java:106)

        at
org.eaglei.datatools.datamanagement.TriplesCRUDService.<init>(TriplesCRUDSer
vice.java:58)

        at
org.eaglei.datatools.datamanagement.DataManagementProvider.<init>(DataManage
mentProvider.java:79)

        at
org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.initialize(A
bstractBulkCommand.java:83)

        at
org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.setupAndExec
uteCommand(AbstractBulkCommand.java:178)

        at
org.eaglei.datatools.datamanagement.command.CommandUtils.execute(CommandUtil
s.java:107)

        at
org.eaglei.datatools.datamanagement.command.ChangePredicate.main(ChangePredi
cate.java:205)

 

 

===== Command did not complete. Root cause: The url for the repository is
invalid.

Stack trace for diagnosis:

 

org.eaglei.services.repository.RepositoryProviderException: The url for the
repository is invalid.

        at
org.eaglei.services.repository.RepositoryHttpConfig.<init>(RepositoryHttpCon
fig.java:106)

        at
org.eaglei.datatools.datamanagement.TriplesCRUDService.<init>(TriplesCRUDSer
vice.java:58)

        at
org.eaglei.datatools.datamanagement.DataManagementProvider.<init>(DataManage
mentProvider.java:79)

        at
org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.initialize(A
bstractBulkCommand.java:83)

        at
org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.setupAndExec
uteCommand(AbstractBulkCommand.java:178)

        at
org.eaglei.datatools.datamanagement.command.CommandUtils.execute(CommandUtil
s.java:107)

        at
org.eaglei.datatools.datamanagement.command.ChangePredicate.main(ChangePredi
cate.java:205)

 

Best Regards,

 

Todd E. Hall     spartan

Systems Administrator

-----------------------------------------------------

Biomedical Research Informatics Core (BRIC)

Clinical and Translational Sciences Institute (CTSI)

Michigan State University - West Fee Hall

909 Fee Road, Room B510 - W1

East Lansing, Michigan 48824-1317

Phone: (517) 884-2906

BRIC Helpline: (517) 643-2075

 

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