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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>I successfully upgraded from 2.14 to 3.07 (I don’t think this is a deal breaker since MS3.04 is the official release) on a test system. When I run the data-migration.sh file, I get the following in the log and on the screen. The ontology is version 1.8.4. When I ran the upgrade.sh shell, it gave no errors or warnings<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>[root@eagle-i-test conf]# bash /opt/eaglei/repo/etc/data-migration.sh -u admin -p xxxxxxx -r https://lcoalhost:8443 <o:p></o:p></p><p class=MsoNormal> Java info:<o:p></o:p></p><p class=MsoNormal>/usr/java/jdk1.7.0_17/bin/java<o:p></o:p></p><p class=MsoNormal>java version "1.7.0_17"<o:p></o:p></p><p class=MsoNormal>Java(TM) SE Runtime Environment (build 1.7.0_17-b02)<o:p></o:p></p><p class=MsoNormal>Java HotSpot(TM) 64-Bit Server VM (build 23.7-b01, mixed mode)<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>using classpath : /opt/eaglei/repo/etc:/opt/eaglei/repo/etc/eagle-i-datatools-datamanagement.jar<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>***** There are no special procedures for this release.<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>***** Standard data migration procedures<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>2014-07-25 10:39:41,518 WARN org.eaglei.services.repository.RepositoryHttpConfig - The url for a repository can not be null.<o:p></o:p></p><p class=MsoNormal>2014-07-25 10:39:41,520 ERROR org.eaglei.datatools.datamanagement.command.CommandUtils - Bulk command did not proceed.<o:p></o:p></p><p class=MsoNormal>org.eaglei.services.repository.RepositoryProviderException: The url for the repository is invalid.<o:p></o:p></p><p class=MsoNormal> at org.eaglei.services.repository.RepositoryHttpConfig.<init>(RepositoryHttpConfig.java:106)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.TriplesCRUDService.<init>(TriplesCRUDService.java:58)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.DataManagementProvider.<init>(DataManagementProvider.java:79)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.initialize(AbstractBulkCommand.java:83)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.setupAndExecuteCommand(AbstractBulkCommand.java:178)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.CommandUtils.execute(CommandUtils.java:107)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.ChangePredicate.main(ChangePredicate.java:205)<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>===== Command did not complete. Root cause: The url for the repository is invalid.<o:p></o:p></p><p class=MsoNormal>Stack trace for diagnosis:<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>org.eaglei.services.repository.RepositoryProviderException: The url for the repository is invalid.<o:p></o:p></p><p class=MsoNormal> at org.eaglei.services.repository.RepositoryHttpConfig.<init>(RepositoryHttpConfig.java:106)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.TriplesCRUDService.<init>(TriplesCRUDService.java:58)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.DataManagementProvider.<init>(DataManagementProvider.java:79)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.initialize(AbstractBulkCommand.java:83)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.AbstractBulkCommand.setupAndExecuteCommand(AbstractBulkCommand.java:178)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.CommandUtils.execute(CommandUtils.java:107)<o:p></o:p></p><p class=MsoNormal> at org.eaglei.datatools.datamanagement.command.ChangePredicate.main(ChangePredicate.java:205)<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Best Regards,<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Todd E. Hall <img width=23 height=26 id="Picture_x0020_1" src="cid:image001.png@01CFA7F5.50368490" alt=spartan><o:p></o:p></p><p class=MsoNormal>Systems Administrator<o:p></o:p></p><p class=MsoNormal>-----------------------------------------------------<o:p></o:p></p><p class=MsoNormal>Biomedical Research Informatics Core (BRIC)<o:p></o:p></p><p class=MsoNormal>Clinical and Translational Sciences Institute (CTSI)<o:p></o:p></p><p class=MsoNormal>Michigan State University - West Fee Hall<o:p></o:p></p><p class=MsoNormal>909 Fee Road, Room B510 – W1<o:p></o:p></p><p class=MsoNormal>East Lansing, Michigan 48824-1317<o:p></o:p></p><p class=MsoNormal>Phone: (517) 884-2906<o:p></o:p></p><p class=MsoNormal>BRIC Helpline<b>:</b> (517) 643-2075<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>