A unique feature of the eagle-i software is that the data collection and search tools are completely driven by ontologies. These ontologies are a set of modules that are written in the OWL language and edited and managed using Protégé. Beginning in 2009, the eagle-i Research Resource Ontology (ERO) was developed alongside the eagle-i applications to model various biomedical research resources such as instruments, Core Facilities, protocols, reagents, animal models and biospecimens. It has now been integrated into the VIVO-ISF Ontology, which leverages and expands upon both the eagle-i and VIVO ontologies to create a semantic framework that describes not only scientific resources but research activities and clinical activities. Anyone interested in contributing to the VIVO-ISF should should contact the OpenRIF (Open Research Information Framework) community for more information.
The ontology modules utilized by the eagle-i software now include:
The guides and instructions in the pages below will help you understand the ontology structure, configure Protégé, edit the ontology, and add annotations to drive the user interfaces.
Status and Availability
Anyone interested in contributing to the VIVO-ISF should should contact the OpenRIF (Open Research Information Framework) community for more information.
- Starting with version 188.8.131.52, new releases of the eagle-i VIVO-ISF modules are available at: https://www.eagle-i.net/ero/
- Historical ERO releases have been archived at: https://open.med.harvard.edu/svn/ero/
- The full VIVO-ISF Ontology is available on GitHub: https://github.com/openrif/vivo-isf-ontology