Error

From mauro.bucalo at gmail.com Thu Feb 15 06:23:42 2018 From: mauro.bucalo at gmail.com (Mauro Bucalo) Date: Thu, 15 Feb 2018 12:23:42 +0100 Subject: [Shrine-users] ONTOLOGYVERSION error Message-ID: Hi everyone, I've been trying to install Shrine for a few weeks, but the Dashboard returns an error on connecting to the CRC for testing the mapping. net.shrine.adapter ExceptionWhileLoadingCrcResponse This is an extract of the shrine.log in particular of the xml sent to the CRC \\SHRINE\SHRINE\ONTOLOGYVERSION ' 2018-gen-31-17:48:39.234 DEBUG [SHRINE][JerseyHttpClient][http-nio-6443-exec-6] Got error code 405 from 'http://192.168.0.110:9090/ i2b2/rest/OntologyService/getChildren' of 'ErrorHTTP method POST is not supported by this URL' 2018-gen-31-17:48:39.235 ERROR [SHRINE][PosterOntClient$][http-nio-6443-exec-6] Error couldn't extract ontology terms from 'ErrorHTTP method POST is not supported by this URL' net.shrine.util.MissingChildNodeException: Child node with label 'message_body' not found in XML 'ErrorHTTP method POST is not supported by this URL' Where is the part to modify this string: \\SHRINE\SHRINE\ONTOLOGYVERSION I have attached my actual shrine.conf I'm using a CentOS 7 VM for Shrine and a separate i2b2 official VM (1.7.09c) to avoid any possible incompatibility. In the i2b2 VM I created: - i2b2shrinemeta user and database with the SHRINE metadata table loaded with the 1.22.8 SQL script - SHRINE project in the admin web client and qep (with qep and DataSteward parameters) and shrine users - SHRINE cell in the admin web client --> CRC SHRINE Federated Query REST http://192.168.0.110:9090/i2b2/services/QueryToolService//SHRINE - modified the ont-ds.xml to add the new datasource i2b2shrinemeta - added rows in the ont and crc db_lookup to fit the datasource in JBoss, the crc one is the same of the Demo project Thanks in advance. Best regards. Mauro -- Ing. Mauro Bucalo, Software Development and Technical Support Dipartimento di Ingegneria Industriale e dell'Informazione Universita' di Pavia Via Ferrata 1, 27100 Pavia, Italy tel: +39.0382.985055 e-mail: mauro.bucalo at gmail.com web-page: http://it.linkedin.com/in/maurobucalo ? -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: shrine.conf.111.semi-working Type: application/octet-stream Size: 3751 bytes Desc: not available URL: From mauro.bucalo at gmail.com Mon Feb 19 06:37:22 2018 From: mauro.bucalo at gmail.com (Mauro Bucalo) Date: Mon, 19 Feb 2018 12:37:22 +0100 Subject: [Shrine-users] ONTOLOGYVERSION error In-Reply-To: References: Message-ID: Hi all, there is someone in the community that has a VM with Shrine+i2b2 installed to share? At this point, compare a working VM with mine is my best option to figure out where I went wrong. Thanks in advance. Best regards. Mauro ? 2018-02-15 12:23 GMT+01:00 Mauro Bucalo : > Hi everyone, > I've been trying to install Shrine for a few weeks, but the Dashboard > returns an error on connecting to the CRC for testing the mapping. > > net.shrine.adapter > ExceptionWhileLoadingCrcResponse > > This is an extract of the shrine.log in particular of the xml sent to the > CRC > > > > type="default" blob="true"> > > \\SHRINE\SHRINE\ONTOLOGYVERSION > > > > > > ' > > 2018-gen-31-17:48:39.234 DEBUG [SHRINE][JerseyHttpClient][http-nio-6443-exec-6] > Got error code 405 from 'http://192.168.0.110:9090/i2b > 2/rest/OntologyService/getChildren' of 'ErrorHTTP > method POST is not supported by this URL' > > 2018-gen-31-17:48:39.235 ERROR [SHRINE][PosterOntClient$][http-nio-6443-exec-6] > Error couldn't extract ontology terms from 'ErrorHTTP > method POST is not supported by this URL' > > net.shrine.util.MissingChildNodeException: Child node with label > 'message_body' not found in XML 'ErrorHTTP > method POST is not supported by this URL' > > Where is the part to modify this string: \\SHRINE\SHRINE\ONTOLOGYVERSION > I have attached my actual shrine.conf > > I'm using a CentOS 7 VM for Shrine and a separate i2b2 official VM > (1.7.09c) to avoid any possible incompatibility. > > In the i2b2 VM I created: > > - i2b2shrinemeta user and database with the SHRINE metadata table loaded > with the 1.22.8 SQL script > - SHRINE project in the admin web client and qep (with qep and DataSteward > parameters) and shrine users > - SHRINE cell in the admin web client --> CRC SHRINE Federated Query REST > http://192.168.0.110:9090/i2b2/services/QueryToolService//SHRINE > - modified the ont-ds.xml to add the new datasource i2b2shrinemeta > - added rows in the ont and crc db_lookup to fit the datasource in JBoss, > the crc one is the same of the Demo project > > Thanks in advance. > > Best regards. > Mauro > > > -- > Ing. Mauro Bucalo, Software Development and Technical Support > Dipartimento di Ingegneria Industriale e dell'Informazione > Universita' di Pavia > Via Ferrata 1, 27100 Pavia, Italy > tel: +39.0382.985055 <0382%20985055> > e-mail: mauro.bucalo at gmail.com > web-page: http://it.linkedin.com/in/maurobucalo > ? > -- Ing. Mauro Bucalo, Software Development and Technical Support Dipartimento di Ingegneria Industriale e dell'Informazione Universita' di Pavia Via Ferrata 1, 27100 Pavia, Italy tel: +39.0382.985055 e-mail: mauro.bucalo at gmail.com web-page: http://it.linkedin.com/in/maurobucalo -------------- next part -------------- An HTML attachment was scrubbed... URL: From rlopez1 at pennstatehealth.psu.edu Wed Feb 21 12:47:10 2018 From: rlopez1 at pennstatehealth.psu.edu (Lopez, Rene) Date: Wed, 21 Feb 2018 17:47:10 +0000 Subject: [Shrine-users] trouble with manual install. Message-ID: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local> I've been trying to work my way through the manual install directions listed on open.med.harvard.edu ( https://open.med.harvard.edu/wiki/display/SHRINE/Manual+Installation+-+SHRINE+1.22.8) but I am having no luck figuring this out. It's my understanding that there used to be an automated installer for this but now there isn't and it is now a manual install. Has any actually been able to install this manually? A lot of the documentation seems to be making assumptions about things I don't know and making referring to files I do not have. I'm currently trying to setup the shrine databases, and there are references to several shell scripts that look like they have a ton of variables that were not defined or explained previously. It seems like this documentation is a very rough edit of what used to be the automated solution, but has not been completely finished. Is anyone willing to offer guidance? Thanks, Rene Lopez Systems Engineer Intermediate, Penn State Hershey Medical Center rlopez1 at pennstatehershey.psu.edu Office: 717.531.0003 x283309 -------------- next part -------------- An HTML attachment was scrubbed... URL: From mauro.bucalo at biomeris.com Wed Feb 21 12:49:55 2018 From: mauro.bucalo at biomeris.com (Mauro Bucalo) Date: Wed, 21 Feb 2018 17:49:55 +0000 Subject: [Shrine-users] trouble with manual install. In-Reply-To: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local> References: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local> Message-ID: Hi Rene, as I wrote during the past weeks, I am in a similar situation. I hope that someone coul help. Best regards Mauro Il giorno mer 21 feb 2018 alle 18:47 Lopez, Rene < rlopez1 at pennstatehealth.psu.edu> ha scritto: > I?ve been trying to work my way through the manual install directions > listed on open.med.harvard.edu ( > https://open.med.harvard.edu/wiki/display/SHRINE/Manual+Installation+-+SHRINE+1.22.8) > but I am having no luck figuring this out. > > > > It?s my understanding that there used to be an automated installer for > this but now there isn?t and it is now a manual install. Has any actually > been able to install this manually? A lot of the documentation seems to be > making assumptions about things I don?t know and making referring to files > I do not have. I?m currently trying to setup the shrine databases, and > there are references to several shell scripts that look like they have a > ton of variables that were not defined or explained previously. > > > > It seems like this documentation is a very rough edit of what used to be > the automated solution, but has not been completely finished. Is anyone > willing to offer guidance? > > > > Thanks, > > > > > > Rene Lopez > > Systems Engineer Intermediate, > > Penn State Hershey Medical Center > > rlopez1 at pennstatehershey.psu.edu > > Office: 717.531.0003 x283309 > > > > > _______________________________________________ > Shrine-users mailing list > Shrine-users at open.med.harvard.edu > https://open.med.harvard.edu/mailman/listinfo/shrine-users > -- *Mauro Bucalo* CTO & Product Manager | Biomeris S.r.l T. +39 0382985055 | M. +39 3284362881 -------------- next part -------------- An HTML attachment was scrubbed... URL: From mauro.bucalo at biomeris.com Tue Feb 27 05:47:56 2018 From: mauro.bucalo at biomeris.com (Mauro Bucalo) Date: Tue, 27 Feb 2018 11:47:56 +0100 Subject: [Shrine-users] trouble with manual install. In-Reply-To: References: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local> Message-ID: Hi Connie, thanks for your MySQL scripts, they are the same that I used for my installation. In my case, it seems that I misconfigured the i2b2/Shrine configuration. >From the dashboard, the only error is in the hub section but looking at hub section nothing strange [image: Immagine incorporata 2] I'm using a CentOS 7 VM for Shrine and a separate i2b2 official VM (1.7.09c) to avoid any possible incompatibility. In the i2b2 VM I created: - i2b2shrinemeta user and database with the SHRINE metadata table loaded with the 1.22.8 SQL script - SHRINE project in the admin web client and qep (with qep and DataSteward parameters) and shrine users attached to both Demo and SHRINE projects - SHRINE cell in the admin web client --> CRC SHRINE Federated Query REST http://192.168.0.110:9090/i2b2/services/QueryToolService//SHRINE - modified the ont-ds.xml to add the new datasource i2b2shrinemeta - added rows in the ont and crc db_lookup to fit the datasource in JBoss, the crc one is the same of the Demo project This is my dashboard homepage: [image: Immagine incorporata 1] When I try to create a query from the shrine-webclient it always return 0 patients, in particular in the download tab of the Query Results undefined # Looking at the i2b2 wildfly log it seems that Shrine tries to use the usual i2b2 CRC avoiding the shrine mapping. This is the usual i2b2 error when the concepts are not in the concept_dimension table. Obviously, in the demodata schema the concept_dimension table is fulfilled with demo concepts. I've attached my shrine.conf file if it can help. Thanks in advance for your precious help. Best regards. Mauro ? 2018-02-26 21:22 GMT+01:00 Zabarouskaya, Connie : > Hello Rene and Mauro, > > > > My name is Connie Zabarouskaya and I worked on the installation of SHRINE > application at Washington University in St. Louis. I would have to agree, > that unfortunately, the documentation on SHRINE wiki website is lacking and > not enough for proper installation/upgrade of the application. > > > > My recommendation would be to document the specific steps and script > modifications (without any sensitive information like usernames and > passwords, but using some kind of dummy values) that you took at your sites > during installation and share for review with other SHRINE users or the > SHRINE dev team (if you have contacts there). That way, we can help > identify the place/step where you may have gone wrong. My understanding is > that each site had to modify the provided installation steps in their own > way (we first installed version 1.19.2 using a customized version of the > automated install, and since then we have always had to modify the provided > instructions during upgrades). If you have specific questions, please let > me know, and I will try to help. > > > > As for database scripts, I'm attaching the MySQL scripts that should work > for 1.22.8, and below is the instruction (please review the SQL before > running in your environment): > > # For a fresh installation (if no databases/tables exist on the SHRINE > server): > > # Create 4 MySQL databases on the server: adapterAuditDB, qepAuditDB, > shrine_query_history, stewardDB > > # Run mysql.ddl and create_broadcaster_audit_table.sql to create tables > in shrine_query_history database > > # Run adapterauditdb_tables.sql to create tables in adapterAuditDB. > > # Run stewardDB_mysql.ddl to create tables in stewardDB. > > # Run qepAuditDB_mysql.ddl to create tables in qepAuditDB. > > > > Sincerely, > > > > > > *Connie Zabarouskaya * > > *Informatics Core Services | Institute for Informatics* > > *Washington University School of Medicine* > > **: *kzabarouskaya at wustl.edu > > > > > > > > *From:* shrine-users-bounces at open.med.harvard.edu [mailto: > shrine-users-bounces at open.med.harvard.edu] *On Behalf Of *Mauro Bucalo > *Sent:* Wednesday, February 21, 2018 11:50 AM > *To:* Lopez, Rene > *Cc:* shrine-users at open.med.harvard.edu > *Subject:* Re: [Shrine-users] trouble with manual install. > > > > Hi Rene, > > as I wrote during the past weeks, I am in a similar situation. > > I hope that someone coul help. > > > > Best regards > > Mauro > > > > Il giorno mer 21 feb 2018 alle 18:47 Lopez, Rene < > rlopez1 at pennstatehealth.psu.edu> ha scritto: > > I?ve been trying to work my way through the manual install directions > listed on open.med.harvard.edu ( https://open.med.harvard.edu/ > wiki/display/SHRINE/Manual+Installation+-+SHRINE+1.22.8) but I am having > no luck figuring this out. > > > > It?s my understanding that there used to be an automated installer for > this but now there isn?t and it is now a manual install. Has any actually > been able to install this manually? A lot of the documentation seems to be > making assumptions about things I don?t know and making referring to files > I do not have. I?m currently trying to setup the shrine databases, and > there are references to several shell scripts that look like they have a > ton of variables that were not defined or explained previously. > > > > It seems like this documentation is a very rough edit of what used to be > the automated solution, but has not been completely finished. Is anyone > willing to offer guidance? > > > > Thanks, > > > > > > Rene Lopez > > Systems Engineer Intermediate, > > Penn State Hershey Medical Center > > rlopez1 at pennstatehershey.psu.edu > > Office: 717.531.0003 x283309 > > > > > > _______________________________________________ > Shrine-users mailing list > Shrine-users at open.med.harvard.edu > https://open.med.harvard.edu/mailman/listinfo/shrine-users > > -- > > *Mauro Bucalo* > > CTO & Product Manager | Biomeris S.r.l > > T. +39 0382985055 <0382%20985055> | M. +39 3284362881 <328%20436%202881> > > > > > > > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > -- *Mauro Bucalo* CTO & Product Manager | Biomeris S.r.l T. +39 0382985055 | M. +39 3284362881 -------------- next part -------------- An HTML attachment was scrubbed... URL: From mauro.bucalo at biomeris.com Tue Feb 27 05:50:20 2018 From: mauro.bucalo at biomeris.com (Mauro Bucalo) Date: Tue, 27 Feb 2018 11:50:20 +0100 Subject: [Shrine-users] trouble with manual install. In-Reply-To: References: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local>

Message-ID: Forgot attachments, [image: Immagine incorporata 2][image: Immagine incorporata 1] Thanks again. ? 2018-02-27 11:47 GMT+01:00 Mauro Bucalo : > Hi Connie, > thanks for your MySQL scripts, they are the same that I used for my > installation. > > In my case, it seems that I misconfigured the i2b2/Shrine configuration. > > From the dashboard, the only error is in the hub section but looking at > hub section nothing strange > > [image: Immagine incorporata 2] > > I'm using a CentOS 7 VM for Shrine and a separate i2b2 official VM > (1.7.09c) to avoid any possible incompatibility. > > > In the i2b2 VM I created: > > > - i2b2shrinemeta user and database with the SHRINE metadata table loaded > with the 1.22.8 SQL script > > - SHRINE project in the admin web client and qep (with qep and DataSteward > parameters) and shrine users attached to both Demo and SHRINE projects > > - SHRINE cell in the admin web client --> CRC SHRINE Federated Query REST > http://192.168.0.110:9090/i2b2/services/QueryToolService//SHRINE > > - modified the ont-ds.xml to add the new datasource i2b2shrinemeta > > - added rows in the ont and crc db_lookup to fit the datasource in JBoss, > the crc one is the same of the Demo project > > > This is my dashboard homepage: > > > [image: Immagine incorporata 1] > > When I try to create a query from the shrine-webclient it always return 0 > patients, in particular in the download tab of the Query Results undefined > # > Looking at the i2b2 wildfly log it seems that Shrine tries to use the > usual i2b2 CRC avoiding the shrine mapping. > This is the usual i2b2 error when the concepts are not in the > concept_dimension table. Obviously, in the demodata schema the > concept_dimension table is fulfilled with demo concepts. I've attached my > shrine.conf file if it can help. > > Thanks in advance for your precious help. > Best regards. > > Mauro > > ? > > 2018-02-26 21:22 GMT+01:00 Zabarouskaya, Connie : > >> Hello Rene and Mauro, >> >> >> >> My name is Connie Zabarouskaya and I worked on the installation of SHRINE >> application at Washington University in St. Louis. I would have to agree, >> that unfortunately, the documentation on SHRINE wiki website is lacking and >> not enough for proper installation/upgrade of the application. >> >> >> >> My recommendation would be to document the specific steps and script >> modifications (without any sensitive information like usernames and >> passwords, but using some kind of dummy values) that you took at your sites >> during installation and share for review with other SHRINE users or the >> SHRINE dev team (if you have contacts there). That way, we can help >> identify the place/step where you may have gone wrong. My understanding is >> that each site had to modify the provided installation steps in their own >> way (we first installed version 1.19.2 using a customized version of the >> automated install, and since then we have always had to modify the provided >> instructions during upgrades). If you have specific questions, please let >> me know, and I will try to help. >> >> >> >> As for database scripts, I'm attaching the MySQL scripts that should work >> for 1.22.8, and below is the instruction (please review the SQL before >> running in your environment): >> >> # For a fresh installation (if no databases/tables exist on the SHRINE >> server): >> >> # Create 4 MySQL databases on the server: adapterAuditDB, qepAuditDB, >> shrine_query_history, stewardDB >> >> # Run mysql.ddl and create_broadcaster_audit_table.sql to create tables >> in shrine_query_history database >> >> # Run adapterauditdb_tables.sql to create tables in adapterAuditDB. >> >> # Run stewardDB_mysql.ddl to create tables in stewardDB. >> >> # Run qepAuditDB_mysql.ddl to create tables in qepAuditDB. >> >> >> >> Sincerely, >> >> >> >> >> >> *Connie Zabarouskaya * >> >> *Informatics Core Services | Institute for Informatics* >> >> *Washington University School of Medicine* >> >> **: *kzabarouskaya at wustl.edu >> >> >> >> >> >> >> >> *From:* shrine-users-bounces at open.med.harvard.edu [mailto: >> shrine-users-bounces at open.med.harvard.edu] *On Behalf Of *Mauro Bucalo >> *Sent:* Wednesday, February 21, 2018 11:50 AM >> *To:* Lopez, Rene >> *Cc:* shrine-users at open.med.harvard.edu >> *Subject:* Re: [Shrine-users] trouble with manual install. >> >> >> >> Hi Rene, >> >> as I wrote during the past weeks, I am in a similar situation. >> >> I hope that someone coul help. >> >> >> >> Best regards >> >> Mauro >> >> >> >> Il giorno mer 21 feb 2018 alle 18:47 Lopez, Rene < >> rlopez1 at pennstatehealth.psu.edu> ha scritto: >> >> I?ve been trying to work my way through the manual install directions >> listed on open.med.harvard.edu ( https://open.med.harvard.edu/w >> iki/display/SHRINE/Manual+Installation+-+SHRINE+1.22.8) but I am having >> no luck figuring this out. >> >> >> >> It?s my understanding that there used to be an automated installer for >> this but now there isn?t and it is now a manual install. Has any actually >> been able to install this manually? A lot of the documentation seems to be >> making assumptions about things I don?t know and making referring to files >> I do not have. I?m currently trying to setup the shrine databases, and >> there are references to several shell scripts that look like they have a >> ton of variables that were not defined or explained previously. >> >> >> >> It seems like this documentation is a very rough edit of what used to be >> the automated solution, but has not been completely finished. Is anyone >> willing to offer guidance? >> >> >> >> Thanks, >> >> >> >> >> >> Rene Lopez >> >> Systems Engineer Intermediate, >> >> Penn State Hershey Medical Center >> >> rlopez1 at pennstatehershey.psu.edu >> >> Office: 717.531.0003 x283309 >> >> >> >> >> >> _______________________________________________ >> Shrine-users mailing list >> Shrine-users at open.med.harvard.edu >> https://open.med.harvard.edu/mailman/listinfo/shrine-users >> >> -- >> >> *Mauro Bucalo* >> >> CTO & Product Manager | Biomeris S.r.l >> >> T. +39 0382985055 <0382%20985055> | M. +39 3284362881 <328%20436%202881> >> >> >> >> >> >> >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> > > > > -- > *Mauro Bucalo* > CTO & Product Manager | Biomeris S.r.l > T. +39 0382985055 <0382%20985055> | M. +39 3284362881 <328%20436%202881> > > > > -- *Mauro Bucalo* CTO & Product Manager | Biomeris S.r.l T. +39 0382985055 | M. +39 3284362881 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Schermata 2018-02-27 alle 09.39.29.png Type: image/png Size: 274391 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Schermata 2018-02-27 alle 09.44.00.png Type: image/png Size: 148654 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: shrine.conf Type: application/octet-stream Size: 3804 bytes Desc: not available URL: From kzabarouskaya at wustl.edu Mon Feb 26 15:22:52 2018 From: kzabarouskaya at wustl.edu (Zabarouskaya, Connie) Date: Mon, 26 Feb 2018 20:22:52 +0000 Subject: [Shrine-users] trouble with manual install. In-Reply-To: References: <27774222d6584420be87ff2ec0a10719@EXCHSRVR15.mshmc.local> Message-ID: Hello Rene and Mauro, My name is Connie Zabarouskaya and I worked on the installation of SHRINE application at Washington University in St. Louis. I would have to agree, that unfortunately, the documentation on SHRINE wiki website is lacking and not enough for proper installation/upgrade of the application. My recommendation would be to document the specific steps and script modifications (without any sensitive information like usernames and passwords, but using some kind of dummy values) that you took at your sites during installation and share for review with other SHRINE users or the SHRINE dev team (if you have contacts there). That way, we can help identify the place/step where you may have gone wrong. My understanding is that each site had to modify the provided installation steps in their own way (we first installed version 1.19.2 using a customized version of the automated install, and since then we have always had to modify the provided instructions during upgrades). If you have specific questions, please let me know, and I will try to help. As for database scripts, I'm attaching the MySQL scripts that should work for 1.22.8, and below is the instruction (please review the SQL before running in your environment): # For a fresh installation (if no databases/tables exist on the SHRINE server): # Create 4 MySQL databases on the server: adapterAuditDB, qepAuditDB, shrine_query_history, stewardDB # Run mysql.ddl and create_broadcaster_audit_table.sql to create tables in shrine_query_history database # Run adapterauditdb_tables.sql to create tables in adapterAuditDB. # Run stewardDB_mysql.ddl to create tables in stewardDB. # Run qepAuditDB_mysql.ddl to create tables in qepAuditDB. Sincerely, Connie Zabarouskaya Informatics Core Services | Institute for Informatics Washington University School of Medicine ?: kzabarouskaya at wustl.edu From: shrine-users-bounces at open.med.harvard.edu [mailto:shrine-users-bounces at open.med.harvard.edu] On Behalf Of Mauro Bucalo Sent: Wednesday, February 21, 2018 11:50 AM To: Lopez, Rene Cc: shrine-users at open.med.harvard.edu Subject: Re: [Shrine-users] trouble with manual install. Hi Rene, as I wrote during the past weeks, I am in a similar situation. I hope that someone coul help. Best regards Mauro Il giorno mer 21 feb 2018 alle 18:47 Lopez, Rene > ha scritto: I?ve been trying to work my way through the manual install directions listed on open.med.harvard.edu ( https://open.med.harvard.edu/wiki/display/SHRINE/Manual+Installation+-+SHRINE+1.22.8) but I am having no luck figuring this out. It?s my understanding that there used to be an automated installer for this but now there isn?t and it is now a manual install. Has any actually been able to install this manually? A lot of the documentation seems to be making assumptions about things I don?t know and making referring to files I do not have. I?m currently trying to setup the shrine databases, and there are references to several shell scripts that look like they have a ton of variables that were not defined or explained previously. It seems like this documentation is a very rough edit of what used to be the automated solution, but has not been completely finished. Is anyone willing to offer guidance? Thanks, Rene Lopez Systems Engineer Intermediate, Penn State Hershey Medical Center rlopez1 at pennstatehershey.psu.edu Office: 717.531.0003 x283309 _______________________________________________ Shrine-users mailing list Shrine-users at open.med.harvard.edu https://open.med.harvard.edu/mailman/listinfo/shrine-users -- Mauro Bucalo CTO & Product Manager | Biomeris S.r.l T. +39 0382985055 | M. +39 3284362881 [https://docs.google.com/uc?export=download&id=0BxHFlc9HUTxOR1JYSE5LVzlUNzA&revid=0BxHFlc9HUTxOT2RSSlV6MlMwalEwdUhFWTRPSmlBdUtjbEtFPQ] ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: mysql.ddl Type: application/octet-stream Size: 3427 bytes Desc: mysql.ddl URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: create_broadcaster_audit_table.sql Type: application/octet-stream Size: 434 bytes Desc: create_broadcaster_audit_table.sql URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: adapterauditdb_tables.sql Type: application/octet-stream Size: 734 bytes Desc: adapterauditdb_tables.sql URL: -------------- next part -------------- A non-text attachment was scrubbed... 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