From Sukdith.Punjasthitkul at dartmouth.edu  Thu Jun 16 14:12:29 2016
From: Sukdith.Punjasthitkul at dartmouth.edu (Sukdith Punjasthitkul)
Date: Thu, 16 Jun 2016 18:12:29 +0000
Subject: [Eagle-i-admins]  Upgrading from 3.7.2 to 4.3.0
Message-ID: <66A5AAD4-2D5E-414D-A9C7-9AAD68FFA43C@dartmouth.edu>

Hi eagle-i admins, 

Within the next 2 weeks, we are planning on upgrading our eagle-i node from 3.7.2 to 4.3.0. Questions: 

+ can we upgrade directly to 4.3.0 ?
+ what java version should we be running when upgrading to 4.3.0? For example, we updated our java to 1.7.0_71 when we upgraded to 3.7.2.

Thanks!

--sukie--




-----
Sukdith "sukie" Punjasthitkul MS

Informatics Collaboratory for Design, Development, and Dissemination (ic3d)
Department of Biomedical Data Science
Geisel School of Medicine at Dartmouth
https://ic3d.dartmouth.edu
603-650-1971


From jlease at hmc.psu.edu  Fri Jun 17 14:16:57 2016
From: jlease at hmc.psu.edu (Lease, Joshua)
Date: Fri, 17 Jun 2016 18:16:57 +0000
Subject: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0
In-Reply-To: <mailman.1.1466179201.8550.eagle-i-admins@open.med.harvard.edu>
References: <mailman.1.1466179201.8550.eagle-i-admins@open.med.harvard.edu>
Message-ID: <1466187417724.31173@hmc.psu.edu>

I'm not sure about the Java version, but you cannot skip directly to 4.3.0. Some release include changes to the ontology. If you just skip those releases, the ontology won't be updated. To figure out which releases you can skip, there's a reference on the wiki: https://open.med.harvard.edu/wiki/display/eaglei/Data+Migration+Guide

Sadly, the wiki page appears to be out of date and does not include releases newer than 4.0.0.

Message: 1
Date: Thu, 16 Jun 2016 18:12:29 +0000
From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
To: "eagle-i-admins at open.med.harvard.edu"
        <eagle-i-admins at open.med.harvard.edu>
Subject: [Eagle-i-admins]  Upgrading from 3.7.2 to 4.3.0
Message-ID: <66A5AAD4-2D5E-414D-A9C7-9AAD68FFA43C at dartmouth.edu>
Content-Type: text/plain; charset="us-ascii"

Hi eagle-i admins,

Within the next 2 weeks, we are planning on upgrading our eagle-i node from 3.7.2 to 4.3.0. Questions:

+ can we upgrade directly to 4.3.0 ?
+ what java version should we be running when upgrading to 4.3.0? For example, we updated our java to 1.7.0_71 when we upgraded to 3.7.2.

Thanks!

--sukie--




-----
Sukdith "sukie" Punjasthitkul MS

Informatics Collaboratory for Design, Development, and Dissemination (ic3d)
Department of Biomedical Data Science
Geisel School of Medicine at Dartmouth
https://ic3d.dartmouth.edu
603-650-1971



------------------------------

_______________________________________________
Eagle-i-admins mailing list
Eagle-i-admins at open.med.harvard.edu
https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins


End of Eagle-i-admins Digest, Vol 31, Issue 1
*********************************************

From Sukdith.Punjasthitkul at dartmouth.edu  Thu Jun 23 17:58:45 2016
From: Sukdith.Punjasthitkul at dartmouth.edu (Sukdith Punjasthitkul)
Date: Thu, 23 Jun 2016 21:58:45 +0000
Subject: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0
In-Reply-To: <1466187417724.31173@hmc.psu.edu>
References: <mailman.1.1466179201.8550.eagle-i-admins@open.med.harvard.edu>
	<1466187417724.31173@hmc.psu.edu>
Message-ID: <729880DB-E434-4A54-B39A-418088F39223@dartmouth.edu>

Thank you everyone for the replies! One more question: we also need to upgrade Tomcat to 7, as version 6 is EOL next year; has anyone run into any issues doing this? 

--sukie--


> On Jun 17, 2016, at 2:16 PM, Lease, Joshua <jlease at hmc.psu.edu> wrote:
> 
> I'm not sure about the Java version, but you cannot skip directly to 4.3.0. Some release include changes to the ontology. If you just skip those releases, the ontology won't be updated. To figure out which releases you can skip, there's a reference on the wiki: https://open.med.harvard.edu/wiki/display/eaglei/Data+Migration+Guide
> 
> Sadly, the wiki page appears to be out of date and does not include releases newer than 4.0.0.
> 
> Message: 1
> Date: Thu, 16 Jun 2016 18:12:29 +0000
> From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
> To: "eagle-i-admins at open.med.harvard.edu"
>        <eagle-i-admins at open.med.harvard.edu>
> Subject: [Eagle-i-admins]  Upgrading from 3.7.2 to 4.3.0
> Message-ID: <66A5AAD4-2D5E-414D-A9C7-9AAD68FFA43C at dartmouth.edu>
> Content-Type: text/plain; charset="us-ascii"
> 
> Hi eagle-i admins,
> 
> Within the next 2 weeks, we are planning on upgrading our eagle-i node from 3.7.2 to 4.3.0. Questions:
> 
> + can we upgrade directly to 4.3.0 ?
> + what java version should we be running when upgrading to 4.3.0? For example, we updated our java to 1.7.0_71 when we upgraded to 3.7.2.
> 
> Thanks!
> 
> --sukie--
> 
> 
> 
> 
> -----
> Sukdith "sukie" Punjasthitkul MS
> 
> Informatics Collaboratory for Design, Development, and Dissemination (ic3d)
> Department of Biomedical Data Science
> Geisel School of Medicine at Dartmouth
> https://ic3d.dartmouth.edu
> 603-650-1971
> 
> 
> 
> ------------------------------
> 
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
> 
> 
> End of Eagle-i-admins Digest, Vol 31, Issue 1
> *********************************************
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins


From jlease at hmc.psu.edu  Fri Jun 24 08:28:55 2016
From: jlease at hmc.psu.edu (Lease, Joshua)
Date: Fri, 24 Jun 2016 12:28:55 +0000
Subject: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0
In-Reply-To: <729880DB-E434-4A54-B39A-418088F39223@dartmouth.edu>
References: <mailman.1.1466179201.8550.eagle-i-admins@open.med.harvard.edu>
	<1466187417724.31173@hmc.psu.edu>,
	<729880DB-E434-4A54-B39A-418088F39223@dartmouth.edu>
Message-ID: <1466771335262.2301@hmc.psu.edu>

We're running tomcat 7 and I do not recall any specific issues.
________________________________________
From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
Sent: Thursday, June 23, 2016 5:58 PM
To: Lease, Joshua
Cc: eagle-i-admins at open.med.harvard.edu
Subject: Re: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0

Thank you everyone for the replies! One more question: we also need to upgrade Tomcat to 7, as version 6 is EOL next year; has anyone run into any issues doing this?

--sukie--


> On Jun 17, 2016, at 2:16 PM, Lease, Joshua <jlease at hmc.psu.edu> wrote:
>
> I'm not sure about the Java version, but you cannot skip directly to 4.3.0. Some release include changes to the ontology. If you just skip those releases, the ontology won't be updated. To figure out which releases you can skip, there's a reference on the wiki: https://open.med.harvard.edu/wiki/display/eaglei/Data+Migration+Guide
>
> Sadly, the wiki page appears to be out of date and does not include releases newer than 4.0.0.
>
> Message: 1
> Date: Thu, 16 Jun 2016 18:12:29 +0000
> From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
> To: "eagle-i-admins at open.med.harvard.edu"
>        <eagle-i-admins at open.med.harvard.edu>
> Subject: [Eagle-i-admins]  Upgrading from 3.7.2 to 4.3.0
> Message-ID: <66A5AAD4-2D5E-414D-A9C7-9AAD68FFA43C at dartmouth.edu>
> Content-Type: text/plain; charset="us-ascii"
>
> Hi eagle-i admins,
>
> Within the next 2 weeks, we are planning on upgrading our eagle-i node from 3.7.2 to 4.3.0. Questions:
>
> + can we upgrade directly to 4.3.0 ?
> + what java version should we be running when upgrading to 4.3.0? For example, we updated our java to 1.7.0_71 when we upgraded to 3.7.2.
>
> Thanks!
>
> --sukie--
>
>
>
>
> -----
> Sukdith "sukie" Punjasthitkul MS
>
> Informatics Collaboratory for Design, Development, and Dissemination (ic3d)
> Department of Biomedical Data Science
> Geisel School of Medicine at Dartmouth
> https://ic3d.dartmouth.edu
> 603-650-1971
>
>
>
> ------------------------------
>
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>
>
> End of Eagle-i-admins Digest, Vol 31, Issue 1
> *********************************************
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins


From Michael_Cherry at hms.harvard.edu  Fri Jun 24 15:06:32 2016
From: Michael_Cherry at hms.harvard.edu (Cherry, Michael)
Date: Fri, 24 Jun 2016 19:06:32 +0000
Subject: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0
In-Reply-To: <1466771335262.2301@hmc.psu.edu>
References: <mailman.1.1466179201.8550.eagle-i-admins@open.med.harvard.edu>
	<1466187417724.31173@hmc.psu.edu>,
	<729880DB-E434-4A54-B39A-418088F39223@dartmouth.edu>
	<1466771335262.2301@hmc.psu.edu>
Message-ID: <CY1PR07MB2181B6B8F06FC2D7F99D2046AD2E0@CY1PR07MB2181.namprd07.prod.outlook.com>

Yes, here at eagle-i central we've been running on Tomcat 7 for several years.

(The only thing to keep in mind is that you'll have to merge in any customizations you may have made to the base Tomcat 6 configuration files, but other than that one-time exercise, the upgrade should be straightforward.)

- Michael Cherry
Sr. Release Operations Engineer
Harvard Catalyst | Harvard Medical School


-----Original Message-----
From: eagle-i-admins-bounces at open.med.harvard.edu [mailto:eagle-i-admins-bounces at open.med.harvard.edu] On Behalf Of Lease, Joshua
Sent: Friday, June 24, 2016 8:29 AM
To: Sukdith Punjasthitkul
Cc: eagle-i-admins at open.med.harvard.edu
Subject: Re: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0

We're running tomcat 7 and I do not recall any specific issues.
________________________________________
From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
Sent: Thursday, June 23, 2016 5:58 PM
To: Lease, Joshua
Cc: eagle-i-admins at open.med.harvard.edu
Subject: Re: [Eagle-i-admins] Upgrading from 3.7.2 to 4.3.0

Thank you everyone for the replies! One more question: we also need to upgrade Tomcat to 7, as version 6 is EOL next year; has anyone run into any issues doing this?

--sukie--


> On Jun 17, 2016, at 2:16 PM, Lease, Joshua <jlease at hmc.psu.edu> wrote:
>
> I'm not sure about the Java version, but you cannot skip directly to 4.3.0. Some release include changes to the ontology. If you just skip those releases, the ontology won't be updated. To figure out which releases you can skip, there's a reference on the wiki: https://open.med.harvard.edu/wiki/display/eaglei/Data+Migration+Guide
>
> Sadly, the wiki page appears to be out of date and does not include releases newer than 4.0.0.
>
> Message: 1
> Date: Thu, 16 Jun 2016 18:12:29 +0000
> From: Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
> To: "eagle-i-admins at open.med.harvard.edu"
>        <eagle-i-admins at open.med.harvard.edu>
> Subject: [Eagle-i-admins]  Upgrading from 3.7.2 to 4.3.0
> Message-ID: <66A5AAD4-2D5E-414D-A9C7-9AAD68FFA43C at dartmouth.edu>
> Content-Type: text/plain; charset="us-ascii"
>
> Hi eagle-i admins,
>
> Within the next 2 weeks, we are planning on upgrading our eagle-i node from 3.7.2 to 4.3.0. Questions:
>
> + can we upgrade directly to 4.3.0 ?
> + what java version should we be running when upgrading to 4.3.0? For example, we updated our java to 1.7.0_71 when we upgraded to 3.7.2.
>
> Thanks!
>
> --sukie--
>
>
>
>
> -----
> Sukdith "sukie" Punjasthitkul MS
>
> Informatics Collaboratory for Design, Development, and Dissemination (ic3d)
> Department of Biomedical Data Science
> Geisel School of Medicine at Dartmouth
> https://ic3d.dartmouth.edu
> 603-650-1971
>
>
>
> ------------------------------
>
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>
>
> End of Eagle-i-admins Digest, Vol 31, Issue 1
> *********************************************
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins

_______________________________________________
Eagle-i-admins mailing list
Eagle-i-admins at open.med.harvard.edu
https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins

From Sukdith.Punjasthitkul at dartmouth.edu  Wed Jun 29 08:36:54 2016
From: Sukdith.Punjasthitkul at dartmouth.edu (Sukdith Punjasthitkul)
Date: Wed, 29 Jun 2016 12:36:54 +0000
Subject: [Eagle-i-admins] Institution Search shows no results after
	upgrading to 4.0.0
Message-ID: <70A97C68-E777-494B-993B-59226E2576B1@dartmouth.edu>

We just upgraded our eagle-i node to 4.0.0. Respository and SWEET works and shows results, but the Institution search page displays "No results found." 

I've attached part of the institution log below. Any idea what would be causing this? 

--sukie--



=========

$ tail -n 200 institution.log

2016-06-29 04:00:01,713 INFO org.eaglei.utilities.servlet.EILog4jConfigurationManager:123 - Found and loaded file: /data/eagle-i/eaglei/conf/institution.log4j.properties
2016-06-29 04:00:04,687 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/ero-app.owl
2016-06-29 04:00:06,937 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/ero-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:06,944 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:08,510 INFO org.eaglei.model.jena.JenaEIOntModel:799 - http://purl.obolibrary.org/obo/ERO_0000006 :  ONT UNHANDLED intersectionOperand: http://purl.obolibrary.org/obo/BFO_0000040
2016-06-29 04:00:08,511 INFO org.eaglei.model.jena.JenaEIOntModel:787 - http://purl.obolibrary.org/obo/ERO_0000006 :  ONT UNHANDLED, Resource intersection operand has null URI
2016-06-29 04:00:08,550 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/ERO_0002094 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:08,561 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/ERO_0002112 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:08,632 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 1687 msecs
2016-06-29 04:00:08,632 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/ero-app.owl-3945msec
2016-06-29 04:00:08,641 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/disease-import-app.owl
2016-06-29 04:00:11,923 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/disease-import-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:11,923 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,104 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 180 msecs
2016-06-29 04:00:12,105 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/disease-import-app.owl-3464msec
2016-06-29 04:00:12,105 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl
2016-06-29 04:00:12,250 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:12,250 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 28 msecs
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl-172msec
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl
2016-06-29 04:00:12,342 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:12,342 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 9 msecs
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl-73msec
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/uberon-import-app.owl
2016-06-29 04:00:14,592 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/uberon-import-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:14,593 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:15,011 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 418 msecs
2016-06-29 04:00:15,012 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/uberon-import-app.owl-2660msec
2016-06-29 04:00:15,012 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl
2016-06-29 04:00:15,956 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:15,957 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:16,112 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 155 msecs
2016-06-29 04:00:16,112 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl-1100msec
2016-06-29 04:00:16,125 INFO org.eaglei.services.nodeinfo.LocalNodeInfoConfig:61 - bean local node service
2016-06-29 04:00:16,374 INFO org.eaglei.institution.server.InstitutionSearchConfig:52 - No system user defined.
2016-06-29 04:00:16,377 INFO org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig:89 - Does search require login? [false]
2016-06-29 04:00:16,381 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:68 - bean nodeRegistry
2016-06-29 04:00:16,438 WARN org.eaglei.services.nodeinfo.NodeRegistryService:324 - Unable to open and/or read config file [node-registry.xml].
2016-06-29 04:00:16,471 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:97 - bean uiConfig
2016-06-29 04:00:16,471 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:102 - bean uiConfig-local
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_SYSTEM_USER] property not found.
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_SYSTEM_PW] property not found.
2016-06-29 04:00:16,473 INFO org.eaglei.services.uiconfig.UIConfigRemote:389 - http://dartmouth.eagle-i.net/i/ - Dartmouth College - /repository/images/site/dartmouth.png
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_LOGOUT_URL] property not found.
2016-06-29 04:00:19,885 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [UI_SEARCH_ANNOUNCEMENT_PANEL_URL] property not found.
2016-06-29 04:00:19,886 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [UI_SEARCH_ANNOUNCEMENT_PANEL_URL] property not found.
2016-06-29 04:00:19,886 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_STEMCELL_INFOGRAPHIC_URL] property not found.
2016-06-29 04:00:19,887 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_STEMCELL_INFOGRAPHIC_URL] property not found.
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:799 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED intersectionOperand: http://purl.obolibrary.org/obo/ERO_0000007
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7c87
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7c85
2016-06-29 04:00:21,581 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/OBI_0000835 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7bb1
2016-06-29 04:00:21,692 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/OBI_0000094 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:21,828 WARN org.eaglei.model.jena.JenaEIOntModel:910 - Unexpected equivalent class construct in: http://purl.obolibrary.org/obo/ERO_0000006, Resource intersection operand has null URI
2016-06-29 04:00:22,036 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://www.ebi.ac.uk/efo/swo/SWO_0000580 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:22,738 WARN org.eaglei.ui.gwt.search.instance.server.InstanceServlet:120 - Failed to find buildversion.properties
2016-06-29 04:00:22,740 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:22,978 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table INSTANCE_SERVLET_LOG_V5
2016-06-29 04:00:22,979 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:22,993 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table CONTACT_LOG_V5
2016-06-29 04:00:22,997 ERROR org.eaglei.ui.gwt.search.server.SearchServlet:220 - Failed to find buildversion.properties
2016-06-29 04:00:22,998 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:23,010 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table SEARCH_SERVLET_LOG_V5
2016-06-29 04:00:23,011 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:23,016 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table SEARCH_SERVLET_COUNT_LOG_V5
2016-06-29 04:00:23,026 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:452 - ....waiting for solr index service SolrSearchIndexer to come up.....
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:468 - Ontology version indexed: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:452 - ....waiting for solr index service DataSuggestIndexer to come up.....
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:468 - Ontology version indexed: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:45,463 WARN org.eaglei.services.connection.Apache4xHttpConnectionProvider:662 - The repository is currently unavailable.
2016-06-29 04:00:45,464 WARN org.eaglei.services.harvest.SingleNodeStreamHarvester:333 - Harvesting/indexing failed for node: https://dartmouth.eagle-i.net:8443/harvest.  Will keep trying. Caught exception: The repository is currently unavailable.
2016-06-29 04:00:45,464 INFO org.eaglei.services.harvest.MultiSourceHarvester:131 - 	institution Dartmouth College harvest failed, indices may not be up to date.
2016-06-29 04:02:24,658 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:08:01,380 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:17:06,359 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:20:50,564 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:24:33,217 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:44,052 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:49,697 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:59,506 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:26:09,276 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 08:34:24,042 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/


From Sophia_Cheng at hms.harvard.edu  Wed Jun 29 11:19:23 2016
From: Sophia_Cheng at hms.harvard.edu (Cheng, Sophia Kuen)
Date: Wed, 29 Jun 2016 15:19:23 +0000
Subject: [Eagle-i-admins] Institution Search shows no results
	after	upgrading to 4.0.0
In-Reply-To: <70A97C68-E777-494B-993B-59226E2576B1@dartmouth.edu>
References: <70A97C68-E777-494B-993B-59226E2576B1@dartmouth.edu>
Message-ID: <BN3PR0701MB1220166C3C294030A2B31063B6230@BN3PR0701MB1220.namprd07.prod.outlook.com>

Hi Sukie,


It looks like possibly the repository had not come up yet and so nothing could be harvested. Could you try the following:


- set institution log4j to debug

- restart tomcat


If you are still seeing an issue with institution, could you send along:


- institution log

- catalina.out (partial is fine)

- localhost.2016-06-29.log


You can send these directly to me if you are concerned about sensitive data in your logs.


Thanks,

Sophia


________________________________
From: eagle-i-admins-bounces at open.med.harvard.edu <eagle-i-admins-bounces at open.med.harvard.edu> on behalf of Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu>
Sent: Wednesday, June 29, 2016 8:36 AM
To: eagle-i-admins at open.med.harvard.edu
Subject: [Eagle-i-admins] Institution Search shows no results after upgrading to 4.0.0

We just upgraded our eagle-i node to 4.0.0. Respository and SWEET works and shows results, but the Institution search page displays "No results found."

I've attached part of the institution log below. Any idea what would be causing this?

--sukie--



=========

$ tail -n 200 institution.log

2016-06-29 04:00:01,713 INFO org.eaglei.utilities.servlet.EILog4jConfigurationManager:123 - Found and loaded file: /data/eagle-i/eaglei/conf/institution.log4j.properties
2016-06-29 04:00:04,687 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/ero-app.owl
2016-06-29 04:00:06,937 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/ero-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:06,944 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:08,510 INFO org.eaglei.model.jena.JenaEIOntModel:799 - http://purl.obolibrary.org/obo/ERO_0000006 :  ONT UNHANDLED intersectionOperand: http://purl.obolibrary.org/obo/BFO_0000040
2016-06-29 04:00:08,511 INFO org.eaglei.model.jena.JenaEIOntModel:787 - http://purl.obolibrary.org/obo/ERO_0000006 :  ONT UNHANDLED, Resource intersection operand has null URI
2016-06-29 04:00:08,550 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/ERO_0002094 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:08,561 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/ERO_0002112 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:08,632 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 1687 msecs
2016-06-29 04:00:08,632 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/ero-app.owl-3945msec
2016-06-29 04:00:08,641 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/disease-import-app.owl
2016-06-29 04:00:11,923 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/disease-import-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:11,923 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,104 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 180 msecs
2016-06-29 04:00:12,105 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/disease-import-app.owl-3464msec
2016-06-29 04:00:12,105 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl
2016-06-29 04:00:12,250 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:12,250 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 28 msecs
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/pato-imports-app.owl-172msec
2016-06-29 04:00:12,278 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl
2016-06-29 04:00:12,342 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:12,342 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 9 msecs
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/go-imports-app.owl-73msec
2016-06-29 04:00:12,352 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://eagle-i.org/ont/app/1.0/uberon-import-app.owl
2016-06-29 04:00:14,592 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://eagle-i.org/ont/app/1.0/uberon-import-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:14,593 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:15,011 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 418 msecs
2016-06-29 04:00:15,012 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://eagle-i.org/ont/app/1.0/uberon-import-app.owl-2660msec
2016-06-29 04:00:15,012 INFO org.eaglei.model.jena.EagleIOntUtils:129 - LOADING model http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl
2016-06-29 04:00:15,956 INFO org.eaglei.model.jena.JenaEIOntModel:189 - http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl ontology version: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:15,957 INFO org.eaglei.model.jena.JenaEIOntModel:254 - initializing class pre-cache...
2016-06-29 04:00:16,112 INFO org.eaglei.model.jena.JenaEIOntModel:271 - class pre-cache initialized: 155 msecs
2016-06-29 04:00:16,112 INFO org.eaglei.model.jena.EagleIOntUtils:149 - LOADED model http://purl.obolibrary.org/obo/ero/dev/mp-imports-app.owl-1100msec
2016-06-29 04:00:16,125 INFO org.eaglei.services.nodeinfo.LocalNodeInfoConfig:61 - bean local node service
2016-06-29 04:00:16,374 INFO org.eaglei.institution.server.InstitutionSearchConfig:52 - No system user defined.
2016-06-29 04:00:16,377 INFO org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig:89 - Does search require login? [false]
2016-06-29 04:00:16,381 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:68 - bean nodeRegistry
2016-06-29 04:00:16,438 WARN org.eaglei.services.nodeinfo.NodeRegistryService:324 - Unable to open and/or read config file [node-registry.xml].
2016-06-29 04:00:16,471 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:97 - bean uiConfig
2016-06-29 04:00:16,471 INFO org.eaglei.services.nodeinfo.NodeInfoConfig:102 - bean uiConfig-local
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_SYSTEM_USER] property not found.
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_SYSTEM_PW] property not found.
2016-06-29 04:00:16,473 INFO org.eaglei.services.uiconfig.UIConfigRemote:389 - http://dartmouth.eagle-i.net/i/ - Dartmouth College - /repository/images/site/dartmouth.png
2016-06-29 04:00:16,473 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_LOGOUT_URL] property not found.
2016-06-29 04:00:19,885 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [UI_SEARCH_ANNOUNCEMENT_PANEL_URL] property not found.
2016-06-29 04:00:19,886 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [UI_SEARCH_ANNOUNCEMENT_PANEL_URL] property not found.
2016-06-29 04:00:19,886 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_STEMCELL_INFOGRAPHIC_URL] property not found.
2016-06-29 04:00:19,887 WARN org.eaglei.services.uiconfig.UIConfigRemote:623 - [SEARCH_STEMCELL_INFOGRAPHIC_URL] property not found.
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:799 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED intersectionOperand: http://purl.obolibrary.org/obo/ERO_0000007
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7c87
2016-06-29 04:00:21,527 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/ERO_0001707 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7c85
2016-06-29 04:00:21,581 INFO org.eaglei.model.jena.JenaEIOntModel:759 - http://purl.obolibrary.org/obo/OBI_0000835 :  ONT UNHANDLED restriction property: -23b13e49:1559b2c121a:-7bb1
2016-06-29 04:00:21,692 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://purl.obolibrary.org/obo/OBI_0000094 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:21,828 WARN org.eaglei.model.jena.JenaEIOntModel:910 - Unexpected equivalent class construct in: http://purl.obolibrary.org/obo/ERO_0000006, Resource intersection operand has null URI
2016-06-29 04:00:22,036 INFO org.eaglei.model.jena.JenaEIOntModel:817 - http://www.ebi.ac.uk/efo/swo/SWO_0000580 :  ONT UNHANDLED equivalent class construct, not an intersection.
2016-06-29 04:00:22,738 WARN org.eaglei.ui.gwt.search.instance.server.InstanceServlet:120 - Failed to find buildversion.properties
2016-06-29 04:00:22,740 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:22,978 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table INSTANCE_SERVLET_LOG_V5
2016-06-29 04:00:22,979 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:22,993 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table CONTACT_LOG_V5
2016-06-29 04:00:22,997 ERROR org.eaglei.ui.gwt.search.server.SearchServlet:220 - Failed to find buildversion.properties
2016-06-29 04:00:22,998 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:23,010 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table SEARCH_SERVLET_LOG_V5
2016-06-29 04:00:23,011 INFO org.eaglei.services.logger.AsynchronousLogger:177 - AsynchronousLogger using Unknown as build identifier, and 2.0.3 19477  2015-06-30 20:16:20 as ontology identifer.
2016-06-29 04:00:23,016 INFO org.eaglei.services.logger.AsynchronousLogger:158 - Asynchronous Logger started for table SEARCH_SERVLET_COUNT_LOG_V5
2016-06-29 04:00:23,026 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:452 - ....waiting for solr index service SolrSearchIndexer to come up.....
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:468 - Ontology version indexed: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:452 - ....waiting for solr index service DataSuggestIndexer to come up.....
2016-06-29 04:00:23,032 INFO org.eaglei.solr.AbstractSolrStreamingIndexer:468 - Ontology version indexed: 2.0.3 19477  2015-06-30 20:16:20
2016-06-29 04:00:45,463 WARN org.eaglei.services.connection.Apache4xHttpConnectionProvider:662 - The repository is currently unavailable.
2016-06-29 04:00:45,464 WARN org.eaglei.services.harvest.SingleNodeStreamHarvester:333 - Harvesting/indexing failed for node: https://dartmouth.eagle-i.net:8443/harvest.  Will keep trying. Caught exception: The repository is currently unavailable.
2016-06-29 04:00:45,464 INFO org.eaglei.services.harvest.MultiSourceHarvester:131 -      institution Dartmouth College harvest failed, indices may not be up to date.
2016-06-29 04:02:24,658 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:08:01,380 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:17:06,359 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:20:50,564 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:24:33,217 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:44,052 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:49,697 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:25:59,506 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 04:26:09,276 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/
2016-06-29 08:34:24,042 INFO org.eaglei.ui.gwt.security.server.NodeSecurityServlet:133 - institution ID: noLoginInstitution; url: https://dartmouth.eagle-i.net:8443/repository/

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