From neil.norman at vanderbilt.edu  Mon Sep 14 12:18:38 2015
From: neil.norman at vanderbilt.edu (Norman, Neil)
Date: Mon, 14 Sep 2015 16:18:38 +0000
Subject: [Eagle-i-admins] Problem getting sweet to load
Message-ID: <94BCCA0AAC6FA744B6D7ADFF809184B04501DCAB@ITS-HCWNEM105.ds.vanderbilt.edu>

I'm having trouble getting Sweet to load when Tomcat starts.  I turned up DEBUG logging in tomcat and get the following error

2015-09-14 10:57:35,602 ERROR org.springframework.web.context.ContextLoader:219 - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'uiConfig' defined in class org.eaglei.sweet.SweetWebappConfig: Instantiation of bean failed; nested exception is org.springframework.beans.factory.BeanDefinitionStoreException: Factory method [org.eaglei.services.uiconfig.UIConfigRemote org.eaglei.sweet.SweetWebappConfig.uiConfig()] threw exception; nested exception is java.lang.IllegalArgumentException: HTTP request may not be null

I'm running it with this environment:
Server version: Apache Tomcat/6.0.24
Server built:   September 16 2014 1842
Server number:  6.0.24.0
OS Name:        Linux
OS Version:     2.6.32-504.12.2.el6.x86_64
Architecture:   amd64
JVM Version:    1.6.0_34-b34
JVM Vendor:     Sun Microsystems Inc.

What else can I provide to be helpful?
Thanks!
NN
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From fcoldren at mail.med.upenn.edu  Wed Sep 23 09:51:15 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Wed, 23 Sep 2015 09:51:15 -0400
Subject: [Eagle-i-admins] broken SWEET help link
Message-ID: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>

Hi,

We just upgraded to 4.0.0, and everything looks fine.

However, the HELP link from our SWEET page

https://eagle-i.itmat.upenn.edu/sweet/

does not go to the help, but is directed to:

https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm


The other links in the top navigation bar (ontology browser, institution,
eagle-i home) are fine.

Can you advise on how to fix this?

Thank you,
Faith
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From fcoldren at mail.med.upenn.edu  Wed Sep 23 11:50:40 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Wed, 23 Sep 2015 11:50:40 -0400
Subject: [Eagle-i-admins] google analytics id not detected
Message-ID: <CAO8PZtCw=oBXVouoCdBeEJHKvMfDo3c3TJR=-YN0wW-OA47hZg@mail.gmail.com>

Hi,

(We are running v4.0.0 of eagle-i)

I have noticed that on our page http://eagle-i.itmat.upenn.edu, the Google
analytics id is not being detected.

We have set in eagle-i-apps.properties:

## Google Analytics

eaglei.repository.analyticsId=UA-37540623-1


I can see in ROOT/index.jsp


    String analyticsId =
Configuration.getInstance().getConfigurationProperty("eaglei.repository.analyticsId");


and


<script type="text/javascript">

  var _gaq = _gaq || [];

  _gaq.push(['_setAccount', '<%= analyticsId %>']);

  _gaq.push(['_setDomainName', 'eagle-i.net']);

  _gaq.push(['_trackPageview']);


When I take a look at the Configuration Property Guide, I find the property
name eaglei.ui.analyticsId not eaglei.repository.analyticsId.


Could you please advise?


Thank you,

Faith
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From sophia_cheng at hms.harvard.edu  Wed Sep 23 12:45:10 2015
From: sophia_cheng at hms.harvard.edu (Sophia K Cheng)
Date: Wed, 23 Sep 2015 12:45:10 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
Message-ID: <5602D716.4040404@hms.harvard.edu>

Hello Faith,

We re-arranged our content site in version 3.5.0, and as part of the 
re-arranging, the urls for the navigation have changed. See: 
https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties

Thanks,
Sophia

-- 

*Sophia K. Cheng*/
Technical Lead/
Harvard Catalyst | eagle-i
email:  sophia?_cheng at hms.harvard.edu <mailto:_cheng at hms.harvard.edu>
skype: sophia.k.cheng

Harvard Medical School
Harvard Catalyst | The Harvard Clinical and Translational Science Center
Landmark Center, Suite 504 West
401 Park Drive
Boston, MA 02215

> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 9:51 AM
> Hi,
>
> We just upgraded to 4.0.0, and everything looks fine.
>
> However, the HELP link from our SWEET page
>
> https://eagle-i.itmat.upenn.edu/sweet/
>
> does not go to the help, but is directed to:
>
> https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm
>
>
> The other links in the top navigation bar (ontology browser, 
> institution, eagle-i home) are fine.
>
> Can you advise on how to fix this?
>
> Thank you,
> Faith


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From sophia_cheng at hms.harvard.edu  Wed Sep 23 12:50:16 2015
From: sophia_cheng at hms.harvard.edu (Sophia K Cheng)
Date: Wed, 23 Sep 2015 12:50:16 -0400
Subject: [Eagle-i-admins] google analytics id not detected
In-Reply-To: <CAO8PZtCw=oBXVouoCdBeEJHKvMfDo3c3TJR=-YN0wW-OA47hZg@mail.gmail.com>
References: <CAO8PZtCw=oBXVouoCdBeEJHKvMfDo3c3TJR=-YN0wW-OA47hZg@mail.gmail.com>
Message-ID: <5602D848.7090802@hms.harvard.edu>

Hello Faith,

Apologies for the confusing properties guide. Hits to your repository 
(http://eagle-i.itmat.upenn.edu/repository/*) should be getting recorded 
using the property: eaglei.repository.analyticsId. This property should 
be specified in the configuration.properties file.

To track hits to http://eagle-i.imat.upenn.edu/*, you will need to add 
the property eaglei.ui.analyticsId to your eagle-i-apps.properties file.

Please let us know if that doesn't work.

Take care,
Sophia

> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 11:50 AM
> Hi,
>
> (We are running v4.0.0 of eagle-i)
>
> I have noticed that on our page http://eagle-i.itmat.upenn.edu, the 
> Google analytics id is not being detected.
>
> We have set in eagle-i-apps.properties:
>
> ## Google Analytics
>
> eaglei.repository.analyticsId=UA-37540623-1
>
>
> I can see in ROOT/index.jsp
>
>
>     String analyticsId = 
> Configuration.getInstance().getConfigurationProperty("eaglei.repository.analyticsId");
>
>
> and
>
>
> <script type="text/javascript">
>
>   var _gaq = _gaq || [];
>
>   _gaq.push(['_setAccount', '<%= analyticsId %>']);
>
>   _gaq.push(['_setDomainName', 'eagle-i.net <http://eagle-i.net>']);
>
>   _gaq.push(['_trackPageview']);
>
>
> When I take a look at the Configuration Property Guide, I find the 
> property name eaglei.ui.analyticsId not eaglei.repository.analyticsId.
>
>
> Could you please advise?
>
>
> Thank you,
>
> Faith
>

-- 


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From fcoldren at mail.med.upenn.edu  Wed Sep 23 14:30:25 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Wed, 23 Sep 2015 14:30:25 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <5602D716.4040404@hms.harvard.edu>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
Message-ID: <CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>

Hi,

Thanks for the message.

We have set these urls as specified in the release notes, but the HELP link
does not function for us from https://eagle-i.itmat.upenn.edu/sweet

The HELP link is functional from http://eagle-i.itmat.upenn.edu/

Is there something else we should look for?

Thank you,
Faith

On Wed, Sep 23, 2015 at 12:45 PM, Sophia K Cheng <
sophia_cheng at hms.harvard.edu> wrote:

> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the
> re-arranging, the urls for the navigation have changed. See:
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> --
>
> *Sophia K. Cheng*
> * Technical Lead*
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
> Faith Coldren <fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 9:51 AM
> Hi,
>
> We just upgraded to 4.0.0, and everything looks fine.
>
> However, the HELP link from our SWEET page
>
> https://eagle-i.itmat.upenn.edu/sweet/
>
> does not go to the help, but is directed to:
>
>
> https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm
>
>
> The other links in the top navigation bar (ontology browser, institution,
> eagle-i home) are fine.
>
> Can you advise on how to fix this?
>
> Thank you,
> Faith
>
>
>
>
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From sophia_cheng at hms.harvard.edu  Thu Sep 24 09:47:46 2015
From: sophia_cheng at hms.harvard.edu (Sophia K Cheng)
Date: Thu, 24 Sep 2015 09:47:46 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
	<CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
Message-ID: <5603FF02.5010301@hms.harvard.edu>

Hi Faith,

Could you double check your properties file? Those two links are 
technically served by different applications and use a different 
navigation source (although they look similar). The SWEET application 
uses the property 
"eaglei.ui.gwt.uiconfig.sweetNavbarUrl"/"eaglei.ui.gwt.uiconfig.sweetFooterNavbarUrl" 
& the landing page (second link you mentioned) use the property 
"eaglei.ui.gwt.uiconfig.institutionNavbarUrl"/"eaglei.ui.gwt.uiconfig.institutionFooterNavbarUrl".

Thanks,
Sophia

> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 2:30 PM
> Hi,
>
> Thanks for the message.
>
> We have set these urls as specified in the release notes, but the HELP 
> link does not function for us from https://eagle-i.itmat.upenn.edu/sweet
>
> The HELP link is functional from http://eagle-i.itmat.upenn.edu/
>
> Is there something else we should look for?
>
> Thank you,
> Faith
>
>
> Sophia K Cheng <mailto:sophia_cheng at hms.harvard.edu>
> September 23, 2015 at 12:45 PM
> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the 
> re-arranging, the urls for the navigation have changed. See: 
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> -- 
>
> *Sophia K. Cheng*/
> Technical Lead/
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu <mailto:_cheng at hms.harvard.edu>
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
>

-- 


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From fcoldren at mail.med.upenn.edu  Thu Sep 24 10:40:14 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Thu, 24 Sep 2015 10:40:14 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <5603FF02.5010301@hms.harvard.edu>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
	<CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
	<5603FF02.5010301@hms.harvard.edu>
Message-ID: <CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>

Hi,

We have the following settings in place in eagle-i-apps.properties:

eaglei.ui.gwt.uiconfig.sweetNavbarUrl=
https://www.eagle-i.net/embed/sweet-navigation/


eaglei.ui.gwt.uiconfig.institutionNavbarUrl=
https://www.eagle-i.net/embed/institution-navigation/

Thanks,
Faith

On Thu, Sep 24, 2015 at 9:47 AM, Sophia K Cheng <
sophia_cheng at hms.harvard.edu> wrote:

> Hi Faith,
>
> Could you double check your properties file? Those two links are
> technically served by different applications and use a different navigation
> source (although they look similar). The SWEET application uses the
> property
> "eaglei.ui.gwt.uiconfig.sweetNavbarUrl"/"eaglei.ui.gwt.uiconfig.sweetFooterNavbarUrl"
> & the landing page (second link you mentioned) use the property
> "eaglei.ui.gwt.uiconfig.institutionNavbarUrl"/"eaglei.ui.gwt.uiconfig.institutionFooterNavbarUrl".
>
> Thanks,
> Sophia
>
> Faith Coldren <fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 2:30 PM
> Hi,
>
> Thanks for the message.
>
> We have set these urls as specified in the release notes, but the HELP
> link does not function for us from https://eagle-i.itmat.upenn.edu/sweet
>
> The HELP link is functional from http://eagle-i.itmat.upenn.edu/
>
> Is there something else we should look for?
>
> Thank you,
> Faith
>
>
> Sophia K Cheng <sophia_cheng at hms.harvard.edu>
> September 23, 2015 at 12:45 PM
> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the
> re-arranging, the urls for the navigation have changed. See:
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> --
>
> *Sophia K. Cheng*
> * Technical Lead*
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
>
> --
>
>
>
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From sophia_cheng at hms.harvard.edu  Fri Sep 25 10:20:10 2015
From: sophia_cheng at hms.harvard.edu (Sophia K Cheng)
Date: Fri, 25 Sep 2015 10:20:10 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
	<CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
	<5603FF02.5010301@hms.harvard.edu>
	<CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>
Message-ID: <5605581A.5090009@hms.harvard.edu>

Hi Faith,

That's odd indeed. We're looking into this now and will get back to you 
shortly.

Thanks,
Sophia

> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 24, 2015 at 10:40 AM
> Hi,
>
> We have the following settings in place in eagle-i-apps.properties:
>
> eaglei.ui.gwt.uiconfig.sweetNavbarUrl=https://www.eagle-i.net/embed/sweet-navigation/
>
>
> eaglei.ui.gwt.uiconfig.institutionNavbarUrl=https://www.eagle-i.net/embed/institution-navigation/
>
>
> Thanks,
> Faith
>
>
> Sophia K Cheng <mailto:sophia_cheng at hms.harvard.edu>
> September 24, 2015 at 9:47 AM
> Hi Faith,
>
> Could you double check your properties file? Those two links are 
> technically served by different applications and use a different 
> navigation source (although they look similar). The SWEET application 
> uses the property 
> "eaglei.ui.gwt.uiconfig.sweetNavbarUrl"/"eaglei.ui.gwt.uiconfig.sweetFooterNavbarUrl" 
> & the landing page (second link you mentioned) use the property 
> "eaglei.ui.gwt.uiconfig.institutionNavbarUrl"/"eaglei.ui.gwt.uiconfig.institutionFooterNavbarUrl".
>
> Thanks,
> Sophia
>
>
> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 2:30 PM
> Hi,
>
> Thanks for the message.
>
> We have set these urls as specified in the release notes, but the HELP 
> link does not function for us from https://eagle-i.itmat.upenn.edu/sweet
>
> The HELP link is functional from http://eagle-i.itmat.upenn.edu/
>
> Is there something else we should look for?
>
> Thank you,
> Faith
>
>
> Sophia K Cheng <mailto:sophia_cheng at hms.harvard.edu>
> September 23, 2015 at 12:45 PM
> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the 
> re-arranging, the urls for the navigation have changed. See: 
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> -- 
>
> *Sophia K. Cheng*/
> Technical Lead/
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu <mailto:_cheng at hms.harvard.edu>
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
>
> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 9:51 AM
> Hi,
>
> We just upgraded to 4.0.0, and everything looks fine.
>
> However, the HELP link from our SWEET page
>
> https://eagle-i.itmat.upenn.edu/sweet/
>
> does not go to the help, but is directed to:
>
> https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm
>
>
> The other links in the top navigation bar (ontology browser, 
> institution, eagle-i home) are fine.
>
> Can you advise on how to fix this?
>
> Thank you,
> Faith

-- 


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From sophia_cheng at hms.harvard.edu  Fri Sep 25 13:31:36 2015
From: sophia_cheng at hms.harvard.edu (Sophia K Cheng)
Date: Fri, 25 Sep 2015 13:31:36 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
	<CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
	<5603FF02.5010301@hms.harvard.edu>
	<CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>
Message-ID: <560584F8.4000906@hms.harvard.edu>

Hello Faith,

It turns out that with one of the latest Wordpress updates, they changed 
how short codes worked (the [site-url] bit). All of our navigation 
sources are served from our 'content site', which is a Wordpress site. 
In the sweet navigation, we are/were using javascript that contained a 
short code. This has now been changed. If you restart your applications 
to pick up the new navigation source, you should be all set.

Thanks!
Sophia

> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 24, 2015 at 10:40 AM
> Hi,
>
> We have the following settings in place in eagle-i-apps.properties:
>
> eaglei.ui.gwt.uiconfig.sweetNavbarUrl=https://www.eagle-i.net/embed/sweet-navigation/
>
>
> eaglei.ui.gwt.uiconfig.institutionNavbarUrl=https://www.eagle-i.net/embed/institution-navigation/
>
>
> Thanks,
> Faith
>
>
> Sophia K Cheng <mailto:sophia_cheng at hms.harvard.edu>
> September 24, 2015 at 9:47 AM
> Hi Faith,
>
> Could you double check your properties file? Those two links are 
> technically served by different applications and use a different 
> navigation source (although they look similar). The SWEET application 
> uses the property 
> "eaglei.ui.gwt.uiconfig.sweetNavbarUrl"/"eaglei.ui.gwt.uiconfig.sweetFooterNavbarUrl" 
> & the landing page (second link you mentioned) use the property 
> "eaglei.ui.gwt.uiconfig.institutionNavbarUrl"/"eaglei.ui.gwt.uiconfig.institutionFooterNavbarUrl".
>
> Thanks,
> Sophia
>
>
> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 2:30 PM
> Hi,
>
> Thanks for the message.
>
> We have set these urls as specified in the release notes, but the HELP 
> link does not function for us from https://eagle-i.itmat.upenn.edu/sweet
>
> The HELP link is functional from http://eagle-i.itmat.upenn.edu/
>
> Is there something else we should look for?
>
> Thank you,
> Faith
>
>
> Sophia K Cheng <mailto:sophia_cheng at hms.harvard.edu>
> September 23, 2015 at 12:45 PM
> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the 
> re-arranging, the urls for the navigation have changed. See: 
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> -- 
>
> *Sophia K. Cheng*/
> Technical Lead/
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu <mailto:_cheng at hms.harvard.edu>
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
>
> Faith Coldren <mailto:fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 9:51 AM
> Hi,
>
> We just upgraded to 4.0.0, and everything looks fine.
>
> However, the HELP link from our SWEET page
>
> https://eagle-i.itmat.upenn.edu/sweet/
>
> does not go to the help, but is directed to:
>
> https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm
>
>
> The other links in the top navigation bar (ontology browser, 
> institution, eagle-i home) are fine.
>
> Can you advise on how to fix this?
>
> Thank you,
> Faith

-- 


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From fcoldren at mail.med.upenn.edu  Mon Sep 28 09:22:51 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Mon, 28 Sep 2015 09:22:51 -0400
Subject: [Eagle-i-admins] broken SWEET help link
In-Reply-To: <560584F8.4000906@hms.harvard.edu>
References: <CAO8PZtCTs6mb1p61gRTujwPYLr_u0vuCHB=Vpxm_r8KJywDRmg@mail.gmail.com>
	<5602D716.4040404@hms.harvard.edu>
	<CAO8PZtCnGH+9aAXunGsLqaMELwVXdUJDmUczvHkhg7HedTpxzQ@mail.gmail.com>
	<5603FF02.5010301@hms.harvard.edu>
	<CAO8PZtA4YQVsBwCr=wjtvj1csNCq+YmoNuhJRyiHwcracLRo=A@mail.gmail.com>
	<560584F8.4000906@hms.harvard.edu>
Message-ID: <CAO8PZtAMUzBLG4bXE3W94bdoHd-LTD0g-bS2tp4hj0dJfT5Mug@mail.gmail.com>

Hi,

The restart fixed it. Thanks for your help!

Faith

On Fri, Sep 25, 2015 at 1:31 PM, Sophia K Cheng <
sophia_cheng at hms.harvard.edu> wrote:

> Hello Faith,
>
> It turns out that with one of the latest Wordpress updates, they changed
> how short codes worked (the [site-url] bit). All of our navigation sources
> are served from our 'content site', which is a Wordpress site. In the sweet
> navigation, we are/were using javascript that contained a short code. This
> has now been changed. If you restart your applications to pick up the new
> navigation source, you should be all set.
>
> Thanks!
> Sophia
>
> Faith Coldren <fcoldren at mail.med.upenn.edu>
> September 24, 2015 at 10:40 AM
> Hi,
>
> We have the following settings in place in eagle-i-apps.properties:
>
> eaglei.ui.gwt.uiconfig.sweetNavbarUrl=
> https://www.eagle-i.net/embed/sweet-navigation/
>
>
> eaglei.ui.gwt.uiconfig.institutionNavbarUrl=
> https://www.eagle-i.net/embed/institution-navigation/
>
> Thanks,
> Faith
>
>
> Sophia K Cheng <sophia_cheng at hms.harvard.edu>
> September 24, 2015 at 9:47 AM
> Hi Faith,
>
> Could you double check your properties file? Those two links are
> technically served by different applications and use a different navigation
> source (although they look similar). The SWEET application uses the
> property
> "eaglei.ui.gwt.uiconfig.sweetNavbarUrl"/"eaglei.ui.gwt.uiconfig.sweetFooterNavbarUrl"
> & the landing page (second link you mentioned) use the property
> "eaglei.ui.gwt.uiconfig.institutionNavbarUrl"/"eaglei.ui.gwt.uiconfig.institutionFooterNavbarUrl".
>
> Thanks,
> Sophia
>
>
> Faith Coldren <fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 2:30 PM
> Hi,
>
> Thanks for the message.
>
> We have set these urls as specified in the release notes, but the HELP
> link does not function for us from https://eagle-i.itmat.upenn.edu/sweet
>
> The HELP link is functional from http://eagle-i.itmat.upenn.edu/
>
> Is there something else we should look for?
>
> Thank you,
> Faith
>
>
> Sophia K Cheng <sophia_cheng at hms.harvard.edu>
> September 23, 2015 at 12:45 PM
> Hello Faith,
>
> We re-arranged our content site in version 3.5.0, and as part of the
> re-arranging, the urls for the navigation have changed. See:
> https://open.med.harvard.edu/wiki/display/eaglei/3.5.0+Release+Notes#id-3.5.0ReleaseNotes-deprecatedChangestoProperties
>
> Thanks,
> Sophia
>
> --
>
> *Sophia K. Cheng*
> * Technical Lead*
> Harvard Catalyst | eagle-i
> email:  sophia?_cheng at hms.harvard.edu
> skype: sophia.k.cheng
>
> Harvard Medical School
> Harvard Catalyst | The Harvard Clinical and Translational Science Center
> Landmark Center, Suite 504 West
> 401 Park Drive
> Boston, MA 02215
>
> Faith Coldren <fcoldren at mail.med.upenn.edu>
> September 23, 2015 at 9:51 AM
> Hi,
>
> We just upgraded to 4.0.0, and everything looks fine.
>
> However, the HELP link from our SWEET page
>
> https://eagle-i.itmat.upenn.edu/sweet/
>
> does not go to the help, but is directed to:
>
>
> https://eagle-i.itmat.upenn.edu/sweet/[site-url]/eagle-i-help/latest/SWEET/eagle-i.htm
>
>
> The other links in the top navigation bar (ontology browser, institution,
> eagle-i home) are fine.
>
> Can you advise on how to fix this?
>
> Thank you,
> Faith
>
>
> --
>
>
>
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