[Eagle-i-admins] Exception when Upgrading to 3.7.2
Lease, Joshua
jlease at hmc.psu.edu
Tue Jun 30 14:57:14 EDT 2015
Admins,
I'm attempting to upgrade from 3.4.2 to 3.7.2 and have an issue when starting the web server. The logs are below and you can see the exception. When attempting to access /institution, I get HTTP 404. Is there a step unique to this upgrade that I am missing? Any ideas?
Thanks,
Joshua Lease
Jun 30, 2015 2:30:19 PM org.apache.catalina.core.AprLifecycleListener lifecycleEvent
INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
Jun 30, 2015 2:30:19 PM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["ajp-bio-8009"]
Jun 30, 2015 2:30:19 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 675 ms
Jun 30, 2015 2:30:19 PM org.apache.catalina.core.StandardService startInternal
INFO: Starting service Catalina
Jun 30, 2015 2:30:19 PM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.59
Jun 30, 2015 2:30:19 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /opt/apache-tomcat-7.0.59/webapps/sweet.war
Jun 30, 2015 2:30:20 PM org.apache.catalina.loader.WebappClassLoader validateJarFile
INFO: validateJarFile(/opt/tomcat/webapps/sweet/WEB-INF/lib/javax.servlet-3.0.0.v201112011016.jar) - jar not loaded. See Servlet Spec 3.0, section 10.7.2. Offending class: javax/servlet/Servlet.class
Jun 30, 2015 2:30:25 PM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
log4j:WARN No appenders could be found for logger (org.eaglei.sweet.server.LoggingContextListener).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Jun 30, 2015 2:30:25 PM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
Jun 30, 2015 2:30:37 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
org.eaglei.datatools.services
Jun 30, 2015 2:30:37 PM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class org.eaglei.datatools.services.EIExternalResourceService
Jun 30, 2015 2:30:37 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 30, 2015 2:30:37 PM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013 12:47 PM'
Jun 30, 2015 2:30:38 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
org.eaglei.datatools.about
Jun 30, 2015 2:30:38 PM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class org.eaglei.datatools.about.AboutSweetService
Jun 30, 2015 2:30:38 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 30, 2015 2:30:38 PM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013 12:47 PM'
Jun 30, 2015 2:30:38 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /opt/apache-tomcat-7.0.59/webapps/sweet.war has finished in 18,502 ms
Jun 30, 2015 2:30:38 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /opt/apache-tomcat-7.0.59/webapps/institution.war
Jun 30, 2015 2:30:38 PM org.apache.catalina.loader.WebappClassLoader validateJarFile
INFO: validateJarFile(/opt/tomcat/webapps/institution/WEB-INF/lib/javax.servlet-3.0.0.v201112011016.jar) - jar not loaded. See Servlet Spec 3.0, section 10.7.2. Offending class: javax/servlet/Servlet.class
Jun 30, 2015 2:30:41 PM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
[06-30 14:30:42] INFO LoggingContextListener [researchstg.hersheymed.net-startStop-1]: About to initialize logging...
[06-30 14:30:42] INFO EILog4jConfigurationManager [researchstg.hersheymed.net-startStop-1]: ServletContext path: /institution
[06-30 14:30:42] INFO EILog4jConfigurationManager [researchstg.hersheymed.net-startStop-1]: Looking for log4j configuration file: institution.log4j.properties
[06-30 14:30:42] INFO EILog4jConfigurationManager [researchstg.hersheymed.net-startStop-1]: eaglei home directory = /data/java/eaglei
Jun 30, 2015 2:30:42 PM org.apache.catalina.core.ApplicationContext log
INFO: Initializing Spring root WebApplicationContext
2015-06-30 14:30:45,179 ERROR org.apache.solr.core.CoreContainer:506 - Error creating core [Search-core]: Error opening new searcher
org.apache.solr.common.SolrException: Error opening new searcher
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:881)
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:654)
at org.apache.solr.core.CoreContainer.create(CoreContainer.java:491)
at org.apache.solr.core.CoreContainer$1.call(CoreContainer.java:255)
at org.apache.solr.core.CoreContainer$1.call(CoreContainer.java:249)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.apache.solr.common.SolrException: Error opening new searcher
at org.apache.solr.core.SolrCore.openNewSearcher(SolrCore.java:1574)
at org.apache.solr.core.SolrCore.getSearcher(SolrCore.java:1686)
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:853)
... 9 more
Caused by: org.apache.lucene.store.LockObtainFailedException: Lock obtain timed out: NativeFSLock@/data/java/eaglei/solrhome/search/Search-core/data/index/write.lock
at org.apache.lucene.store.Lock.obtain(Lock.java:89)
at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:753)
at org.apache.solr.update.SolrIndexWriter.<init>(SolrIndexWriter.java:77)
at org.apache.solr.update.SolrIndexWriter.create(SolrIndexWriter.java:64)
at org.apache.solr.update.DefaultSolrCoreState.createMainIndexWriter(DefaultSolrCoreState.java:279)
at org.apache.solr.update.DefaultSolrCoreState.getIndexWriter(DefaultSolrCoreState.java:111)
at org.apache.solr.core.SolrCore.openNewSearcher(SolrCore.java:1537)
... 11 more
2015-06-30 14:30:45,184 ERROR org.springframework.web.context.ContextLoader:331 - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'institutionSearchConfig': Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1093)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1038)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:762)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5016)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5524)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:649)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1081)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1877)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:163)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:89)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1086)
... 27 more
Caused by: java.lang.NullPointerException
at java.util.concurrent.ConcurrentHashMap.put(ConcurrentHashMap.java:1124)
at org.eaglei.solr.EagleISolrConfig.<init>(EagleISolrConfig.java:155)
at org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig.<init>(AbstractSearchAppConfig.java:74)
at org.eaglei.institution.server.InstitutionSearchConfig.<init>(InstitutionSearchConfig.java:46)
at org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde.<init>(<generated>)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
... 29 more
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'institutionSearchConfig': Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1093)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1038)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:762)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5016)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5524)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:649)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1081)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1877)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:163)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:89)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1086)
... 27 more
Caused by: java.lang.NullPointerException
at java.util.concurrent.ConcurrentHashMap.put(ConcurrentHashMap.java:1124)
at org.eaglei.solr.EagleISolrConfig.<init>(EagleISolrConfig.java:155)
at org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig.<init>(AbstractSearchAppConfig.java:74)
at org.eaglei.institution.server.InstitutionSearchConfig.<init>(InstitutionSearchConfig.java:46)
at org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde.<init>(<generated>)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
... 29 more
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.StandardContext listenerStart
SEVERE: Exception sending context initialized event to listener instance of class org.eaglei.institution.server.InstitutionContextListener
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'institutionSearchConfig': Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1093)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1038)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:762)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5016)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5524)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:649)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1081)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1877)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:163)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:89)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1086)
... 27 more
Caused by: java.lang.NullPointerException
at java.util.concurrent.ConcurrentHashMap.put(ConcurrentHashMap.java:1124)
at org.eaglei.solr.EagleISolrConfig.<init>(EagleISolrConfig.java:155)
at org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig.<init>(AbstractSearchAppConfig.java:74)
at org.eaglei.institution.server.InstitutionSearchConfig.<init>(InstitutionSearchConfig.java:46)
at org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde.<init>(<generated>)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
... 29 more
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.StandardContext startInternal
SEVERE: Error listenerStart
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.StandardContext startInternal
SEVERE: Context [/institution] startup failed due to previous errors
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.StandardContext listenerStop
SEVERE: Exception sending context destroyed event to listener instance of class org.eaglei.institution.server.InstitutionContextListener
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'institutionSearchConfig': Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1093)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1038)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:762)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5016)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5524)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:649)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1081)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1877)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:724)
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde]: Constructor threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:163)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:89)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:1086)
... 27 more
Caused by: java.lang.NullPointerException
at java.util.concurrent.ConcurrentHashMap.put(ConcurrentHashMap.java:1124)
at org.eaglei.solr.EagleISolrConfig.<init>(EagleISolrConfig.java:155)
at org.eaglei.ui.gwt.search.server.AbstractSearchAppConfig.<init>(AbstractSearchAppConfig.java:74)
at org.eaglei.institution.server.InstitutionSearchConfig.<init>(InstitutionSearchConfig.java:46)
at org.eaglei.institution.server.InstitutionSearchConfig$$EnhancerBySpringCGLIB$$f7420dde.<init>(<generated>)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
... 29 more
Jun 30, 2015 2:30:45 PM org.apache.catalina.core.ApplicationContext log
INFO: Closing Spring root WebApplicationContext
Jun 30, 2015 2:30:45 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [/institution] appears to have started a thread named [searcherExecutor-6-thread-1] but has failed to stop it. This is very likely to create a memory leak.
Jun 30, 2015 2:30:45 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [/institution] appears to have started a thread named [Thread-4] but has failed to stop it. This is very likely to create a memory leak.
Jun 30, 2015 2:30:45 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [/institution] appears to have started a thread named [Thread-5] but has failed to stop it. This is very likely to create a memory leak.
Jun 30, 2015 2:30:45 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /opt/apache-tomcat-7.0.59/webapps/institution.war has finished in 6,837 ms
Jun 30, 2015 2:30:45 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /opt/apache-tomcat-7.0.59/webapps/ROOT.war
Jun 30, 2015 2:30:45 PM org.apache.catalina.startup.SetContextPropertiesRule begin
WARNING: [SetContextPropertiesRule]{Context} Setting property 'debug' to '0' did not find a matching property.
Jun 30, 2015 2:30:45 PM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Context/Realm} Setting property 'debug' to '99' did not find a matching property.
log4j:WARN No appenders could be found for logger (org.apache.solr.update.SolrIndexWriter).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Jun 30, 2015 2:30:48 PM org.apache.catalina.core.ApplicationContext log
INFO: No Spring WebApplicationInitializer types detected on classpath
log4j:WARN No appenders could be found for logger (org.eaglei.repository.Lifecycle).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
***INFO*** (at Tue Jun 30 14:30:48 EDT 2015) eagle-i Configuration: /data/java/eaglei/repo, realmDatasource = jdbc/eaglei
***INFO*** (at Tue Jun 30 14:30:48 EDT 2015) eagle-i Configuration: Set up default log4j config: logfile directory: /data/java/eaglei/repo/logs
***INFO*** (at Tue Jun 30 14:30:48 EDT 2015) eagle-i Configuration: Got 0 initial log4j properties from repo configuration.
***INFO*** (at Tue Jun 30 14:30:48 EDT 2015) eagle-i Configuration: Configuring log4j with properties: {log4j.appender.repository.ImmediateFlush=false, log4j.appender.repository.BufferedIO=true, log4j.appender.repository.Append=true, log4j.appender.repository.layout=org.apache.log4j.PatternLayout, log4j.logger.org.eaglei.repository=INFO, repository, log4j.appender.repository.File=/data/java/eaglei/repo/logs/repository.log, log4j.appender.repository=org.apache.log4j.DailyRollingFileAppender, log4j.appender.repository.layout.ConversionPattern=%d{ISO8601} T=%t %p %c - %m%n, log4j.additivity.org.eaglei.repository=false, log4j.logger.org.openrdf=WARN, repository, log4j.appender.repository.Encoding=UTF-8, log4j.appender.repository.DatePattern='.'yyyy-MM-dd}
***INFO*** (at Tue Jun 30 14:30:48 EDT 2015) eagle-i Configuration: Activating log4j appender "repository" for logger org.eaglei.repository
Jun 30, 2015 2:30:48 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
org.eaglei.repository.about
Jun 30, 2015 2:30:48 PM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class org.eaglei.repository.about.AboutRepositoryService
Jun 30, 2015 2:30:48 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 30, 2015 2:30:48 PM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013 12:47 PM'
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /opt/apache-tomcat-7.0.59/webapps/ROOT.war has finished in 4,417 ms
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deploying web application directory /opt/apache-tomcat-7.0.59/webapps/${catalina.base}
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deployment of web application directory /opt/apache-tomcat-7.0.59/webapps/${catalina.base} has finished in 178 ms
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deploying web application directory /opt/apache-tomcat-7.0.59/webapps/static
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deployment of web application directory /opt/apache-tomcat-7.0.59/webapps/static has finished in 152 ms
Jun 30, 2015 2:30:49 PM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["ajp-bio-8009"]
Jun 30, 2015 2:30:49 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 30153 ms
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