From David_Neiman at hms.harvard.edu  Mon Feb  2 09:40:48 2015
From: David_Neiman at hms.harvard.edu (Neiman, David)
Date: Mon, 2 Feb 2015 09:40:48 -0500
Subject: [Eagle-i-admins] Institution search issues
In-Reply-To: <36C80DCAE398054C856EA3995D1FF665DB5E3CD2@EXMBX3.mshmc.local>
References: <36C80DCAE398054C856EA3995D1FF665DB5E3CD2@EXMBX3.mshmc.local>
Message-ID: <4139FAF5-0F91-491B-9B1C-5A2491C907CD@hms.harvard.edu>

Joshua (and others on the eagle-i admin list):

So that others my know about the resolution of this issue, it appears the solution was to install the latest version of the code plus, more importantly, ensure that the namespace of in the repository configuration file is HTTP (not HTTPS) and that all resource URI?s are HTTP.

Thanks,
Dave Neiman
eagle-i team

On Jan 13, 2015, at 9:08 AM, Lease, Joshua <jlease at hmc.psu.edu<mailto:jlease at hmc.psu.edu>> wrote:

Admins,

Our eagle-i instance is experiencing issues with search results in the institution webapp. When entering the exact name of a resource, no search results are found. If the search term is slightly different from the name of the resource many search results are found. Has anyone experienced this before? Here are the requests sent between the browser and server:

SUCCESSFUL SEARCH:
REQUEST
7|0|6|https://eagle-i.ctsi.psu.edu/institution/institution/|F59B16A09F31F53E14A467E8FB06B1DE|org.eaglei.ui.gwt.suggest.rpc.SuggestServiceRemote|getDataSuggestions|java.lang.String/2004016611|penn state hershey cancer institut|1|2|3|4|1|5|6|

RESPONSE
//OK[1.0,0,103,103,102,0,0,3,2,1.0,0,101,101,100,0,0,3,2,1.0,0,99,99,98,0,0,3,2,1.0,0,97,97,96,0,0,3,2,1.0,0,95,95,94,0,0,3,2,1.0,0,93,93,92,0,0,3,2,1.0,0,91,91,90,0,0,3,2,1.0,0,89,89,88,0,0,3,2,1.0,0,87,87,86,0,0,3,2,1.0,0,85,85,84,0,0,3,2,1.0,0,83,83,82,0,0,3,2,1.0,0,81,81,80,0,0,3,2,1.0,0,79,79,78,0,0,3,2,1.0,0,77,77,76,0,0,3,2,1.0,0,75,75,74,0,0,3,2,1.0,0,73,73,72,0,0,3,2,1.0,0,71,71,70,0,0,3,2,1.0,0,69,69,68,0,0,3,2,1.0,0,67,67,66,0,0,3,2,1.0,0,65,65,64,0,0,3,2,1.0,0,63,63,62,0,0,3,2,1.0,0,61,61,60,0,0,3,2,1.0,0,59,59,58,0,0,3,2,1.0,0,57,57,56,0,0,3,2,1.0,0,55,55,54,0,0,3,2,1.0,0,53,53,52,0,0,3,2,1.0,0,51,51,50,0,0,3,2,1.0,0,49,49,48,0,0,3,2,1.0,0,47,47,46,0,0,3,2,1.0,0,45,45,44,0,0,3,2,1.0,0,43,43,42,0,0,3,2,1.0,0,41,41,40,0,0,3,2,1.0,0,39,39,38,0,0,3,2,1.0,0,37,37,36,0,0,3,2,1.0,0,35,35,34,0,0,3,2,1.0,0,33,33,32,0,0,3,2,1.0,0,31,31,30,0,0,3,2,1.0,0,29,29,28,0,0,3,2,1.0,0,27,27,26,0,0,3,2,1.0,0,25,25,24,0,0,3,2,1.0,0,23,23,22,0,0,3,2,1.0,0,21,21,20,0,0,3,2,1.0,0,19,19,18,0,0,3,2,1.0,0,17,17,16,0,0,3,2,1.0,0,15,15,14,0,0,3,2,1.0,0,13,13,12,0,0,3,2,1.0,0,11,11,10,0,0,3,2,1.0,0,9,9,8,0,0,3,2,1.0,0,7,7,6,0,0,3,2,1.0,0,5,5,4,0,0,3,2,50,1,["java.util.ArrayList/4159755760","org.eaglei.ui.gwt.suggest.DataSuggestion/49807868","org.eaglei.suggest.EntityMatch/3727686613","\x3Cspan 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class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee of the neurosciences","penn state institute of the neurosciences","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ees of energy and the environment","penn state institutes of energy and the environment","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E school of law","penn state school of law","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E data center","pennsylvania state data center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E agriculture and environment center","penn state agriculture and environment center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E erie, the behrend campus","penn state erie, the behrend campus","the \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E university","the pennsylvania state university","\x3Cspan class\x3D\x27termHighlight\x27\x3Ecancer\x3C/span\x3E","cancer","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee of \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E and regional affairs","institute of state and regional affairs","applied energy research center at \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E behrend","applied energy research center at penn state behrend","\x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E of \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania department of health commonwealth universal research enhancement (cure) awards","state of pennsylvania department of health commonwealth universal research enhancement (cure) awards","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E campus","hershey campus","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E medical center clinical laboratories","hershey medical center clinical laboratories","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Ey kris-etherton","penny kris-etherton","prevention research center alcohol and skin \x3Cspan class\x3D\x27termHighlight\x27\x3Ecancer\x3C/span\x3E projects","prevention research center alcohol and skin cancer projects","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania twin registry","pennsylvania twin registry","ems energy \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","ems energy institute","e-education \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","e-education institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E medical center clinical research center","hershey medical center clinical research center","central \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania laboratory for biofuels","central pennsylvania laboratory for biofuels","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania housing research center","pennsylvania housing research center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania water resources research center","pennsylvania water resources research center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania space grant consortium","pennsylvania space grant consortium","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania college of technology","pennsylvania college of technology","sustainability \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","sustainability institute","population research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","population research institute","diabetes and obesity \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","diabetes and obesity institute","genomics sciences \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","genomics sciences institute","gear research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","gear research institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for cyberscience","institute for cyberscience","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee of the neurosciences","institute of the neurosciences","materials research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","materials research institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for the arts and humanities","institute for the arts and humanities","earth and environmental systems \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","earth and environmental systems institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for personalized  medicine","institute for personalized  medicine","hospitality leadership \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","hospitality leadership institute","facilities engineering \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","facilities engineering institute","environment and natural resources \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","environment and natural resources institute","engineering energy \x26amp; environmental \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","engineering energy \x26 environmental institute","larson transportation \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee","larson transportation institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for gravitation and the cosmos","institute for gravitation and the cosmos","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for the study of business markets","institute for the study of business markets","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for real estate studies","institute for real estate studies","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee for the study of adult literacy","institute for the study of adult literacy","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ee of molecular evolutionary genetics","institute of molecular evolutionary genetics","the huck \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitut\x3C/span\x3Ees of the life sciences","the huck institutes of the life sciences"],0,7]


REQUEST
7|0|10|https://eagle-i.ctsi.psu.edu/institution/institution/|2FD0E0FCCFB6942DA4DEBA56C60CB75A|org.eaglei.ui.gwt.search.rpc.SearchServiceRemote|search|java.lang.String/2004016611|org.eaglei.search.provider.SearchRequest/2568535741|79616498-41d0-4af9-8ee3-51066126bd84|org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810|org.eaglei.search.provider.SearchRequest$Term/132458229|penn state hershey cancer institut|1|2|3|4|2|5|6|7|6|0|10|0|0|0|0|8|0|0|9|10|0|

RESPONSE
//OK[0,220,0,64,-7,66,5,0.07507295161485672,0,0,-19,0,0,65,64,3,63,5,0,19,60,4,3,35,5,0.09660905599594116,0,0,-19,62,33,61,60,3,59,5,0,19,56,4,3,35,5,0.10720237344503403,0,0,-19,58,33,57,56,3,55,5,0,19,50,-8,54,5,0.29314279556274414,53,3,52,5,0,-19,51,0,0,50,3,49,5,0,19,47,8,3,45,5,0.36603257060050964,0,0,-19,48,0,0,47,3,46,5,0,19,43,-6,45,5,0.5076385140419006,0,0,-19,44,0,0,43,3,42,5,0,19,37,41,3,40,5,5.489207744598389,26,3,25,5,0,-19,39,0,38,37,3,36,5,0,19,26,-3,35,5,5.671922206878662,0,0,-19,34,33,32,26,3,25,5,0,19,30,28,3,27,5,6.160087585449219,26,3,25,5,0,-19,31,0,0,30,3,29,5,0,19,21,28,3,27,5,6.220584392547607,26,3,25,5,0,24,3,23,5,22,0,0,21,3,20,5,0,19,10,18,0,17,16,0,0,15,0,0,0,0,10,0,14,0,13,12,3,11,5,10,3,-4,9,3,-4,8,3,7,3,6,5,4,3,4,2,0,0,1,["org.eaglei.ui.gwt.search.rpc.ClientSearchResultSet/802573315","java.util.HashMap/1797211028","org.eaglei.model.EIURI/1766561243","http://vivoweb.org/ontology/core#Institute","org.eaglei.model.EIEntity/2875209810","Organization","http://xmlns.com/foaf/0.1/Organization","http://vivoweb.org/ontology/core#CoreLaboratory","http://vivoweb.org/ontology/core#Hospital","http://purl.obolibrary.org/obo/OBI_0000049","Instrument","http://purl.obolibrary.org/obo/ERO_0000004","org.eaglei.search.provider.SearchResultSet/3755269407","org.eaglei.search.provider.SearchRequest/2568535741","org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810","org.eaglei.search.provider.SearchRequest$Term/132458229","penn state hershey cancer institut","java.util.ArrayList/4159755760","org.eaglei.search.provider.SearchResult/1143302311","Clinical Trials","https://eagle-i.ctsi.psu.edu/i/00000147-5ae3-2c59-4e81-862280000000","...Resource Description: \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E Clinical Trials Office is centralized, providing support for \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E clinical investigators in the development, implementation and completion of clinical...","The Pennsylvania State University","https://eagle-i.ctsi.psu.edu/","Penn State Hershey Cancer Institute","https://eagle-i.ctsi.psu.edu/i/00000147-5a9e-88dd-4e81-862280000000","Service","http://purl.obolibrary.org/obo/ERO_0000005","Theraputics","https://eagle-i.ctsi.psu.edu/i/00000147-5ae3-538b-4e81-862280000000","...Resource Description: The \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E\x27s Experimental Therapeutics program (ET) has 3 main research themes: molecular target identification, drug discovery and development and implementation...","\x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E","\x3Cb\x3EInstitute\x3C/b\x3E","...Resource Description: The PSHCI emphasizes \x3Cb\x3Estate\x3C/b\x3E-of-the-art interdisciplinary patient care, in which medical, surgical and radiation oncologists jointly determine the best therapeutic course for each patient. In addition...","Institute","Cancer","https://eagle-i.ctsi.psu.edu/i/00000147-5ac4-b2ed-4e81-862280000000","\x3Cb\x3ECancer\x3C/b\x3E","...Resource Description: The \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E Biorepository was established in 2004, offers investigators within the \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E and its affiliates a resource to enhance research into \x3Cb\x3Ecancer\x3C/b\x3E and other disease...","Biological Specimen","http://purl.obolibrary.org/obo/ERO_0000020","Biostatistics Core","https://eagle-i.ctsi.psu.edu/i/00000147-5ab6-5362-4e81-862280000000","...Affiliation: \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E...Resource Description: The Biostatistics Core of the \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E provides high quality biostatistics support in the design and data analysis primarily for members of the \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E...","Core Laboratory","Drug Discovery and Delivery Core","https://eagle-i.ctsi.psu.edu/i/00000147-5ab6-88c4-4e81-862280000000","Resource Description: The Drug Discovery and Delivery Core provides investigators with access to technological expertise enabling RNAi and compound library screening.......Affiliation: \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E...","4000 QTrap Hybrid Triple-Quadrupole \x26 Agilent 1100 HPLC System","https://eagle-i.ctsi.psu.edu/i/00000147-5ad7-9282-4e81-862280000000","Resource Description: The 4000 QTRAP LC/MS/MS System is ABSciex\x27s premier Hybrid Triple Quadrupole/Linear Ion trap mass spectrometer. Ideal for drug discovery and development, metabolite identification, contaminant.........Funded By: \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E \x3Cb\x3ECancer\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E...","Mass Spectrometry and Proteomics Core Facility","https://eagle-i.ctsi.psu.edu/i/00000147-5ab6-c06f-4e81-862280000000","Mass spectrometer","Penn State Institute of the Neurosciences","https://eagle-i.ctsi.psu.edu/i/00000147-5a9e-b02a-4e81-862280000000","\x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EInstitute\x3C/b\x3E of the Neurosciences","Resource Description: Providing oversight and coordination for neuroscience-related activities in education, research, patient care and outreach, while promoting an intellectual environment that enhances the.........Affiliation: The Huck \x3Cb\x3EInstitutes\x3C/b\x3E of the Life Sciences...","Penn State Institutes of Energy and the Environment","https://eagle-i.ctsi.psu.edu/i/00000149-1fd2-c37d-8051-da6580000000","\x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EInstitutes\x3C/b\x3E of Energy and the Environment","...Resource Description: The mission of the \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EInstitutes\x3C/b\x3E of Energy and the Environment is to expand \x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E\x27s capacity to pursue the newest frontiers in energy and environmental research by encouraging...","Penn State Hershey Medical Center","https://eagle-i.ctsi.psu.edu/i/00000147-5ab8-15bb-4e81-862280000000","\x3Cb\x3EPenn\x3C/b\x3E \x3Cb\x3EState\x3C/b\x3E \x3Cb\x3EHershey\x3C/b\x3E Medical Center","Hospital"],0,7]


REQUEST
7|0|10|https://eagle-i.ctsi.psu.edu/institution/institution/|2FD0E0FCCFB6942DA4DEBA56C60CB75A|org.eaglei.ui.gwt.search.rpc.SearchServiceRemote|getResourceCounts|java.lang.String/2004016611|org.eaglei.search.provider.SearchRequest/2568535741|79616498-41d0-4af9-8ee3-51066126bd84|org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810|org.eaglei.search.provider.SearchRequest$Term/132458229|penn state hershey cancer institut|1|2|3|4|2|5|6|7|6|0|10|0|0|0|0|8|0|0|9|10|0|

RESPONSE
//OK[0,-4,0,24,23,0,0,22,0,0,0,0,10,0,21,0,20,7,19,5,0,-6,2,0,18,7,17,5,0,14,3,2,0,16,7,15,5,0,-6,2,1,14,7,13,5,0,18,3,2,0,12,7,11,5,0,-6,2,0,10,7,9,5,0,13,3,2,0,8,7,6,5,0,1,3,2,7,0,4,0,0,0,0,0,3,2,49,1,["org.eaglei.search.provider.ClassCountResult/1700747181","org.eaglei.search.provider.CountResult/1260450194","java.lang.Integer/3438268394","java.util.TreeSet/4043497002","org.eaglei.model.EIEntity/2875209810","Biological Specimen","org.eaglei.model.EIURI/1766561243","http://purl.obolibrary.org/obo/ERO_0000020","Core Laboratory","http://vivoweb.org/ontology/core#CoreLaboratory","Database","http://purl.obolibrary.org/obo/ERO_0001716","Instrument","http://purl.obolibrary.org/obo/ERO_0000004","Research Opportunity","http://purl.obolibrary.org/obo/ERO_0000595","Service","http://purl.obolibrary.org/obo/ERO_0000005","Software","http://purl.obolibrary.org/obo/ERO_0000071","org.eaglei.search.provider.SearchRequest/2568535741","org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810","org.eaglei.search.provider.SearchRequest$Term/132458229","penn state hershey cancer institut"],0,7]

FAILED SEARCH:
REQUEST
7|0|6|https://eagle-i.ctsi.psu.edu/institution/institution/|F59B16A09F31F53E14A467E8FB06B1DE|org.eaglei.ui.gwt.suggest.rpc.SuggestServiceRemote|getDataSuggestions|java.lang.String/2004016611|penn state hershey cancer institute|1|2|3|4|1|5|6|

RESPONSE
//OK[1.0,0,103,103,102,0,0,3,2,1.0,0,101,101,100,0,0,3,2,1.0,0,99,99,98,0,0,3,2,1.0,0,97,97,96,0,0,3,2,1.0,0,95,95,94,0,0,3,2,1.0,0,93,93,92,0,0,3,2,1.0,0,91,91,90,0,0,3,2,1.0,0,89,89,88,0,0,3,2,1.0,0,87,87,86,0,0,3,2,1.0,0,85,85,84,0,0,3,2,1.0,0,83,83,82,0,0,3,2,1.0,0,81,81,80,0,0,3,2,1.0,0,79,79,78,0,0,3,2,1.0,0,77,77,76,0,0,3,2,1.0,0,75,75,74,0,0,3,2,1.0,0,73,73,72,0,0,3,2,1.0,0,71,71,70,0,0,3,2,1.0,0,69,69,68,0,0,3,2,1.0,0,67,67,66,0,0,3,2,1.0,0,65,65,64,0,0,3,2,1.0,0,63,63,62,0,0,3,2,1.0,0,61,61,60,0,0,3,2,1.0,0,59,59,58,0,0,3,2,1.0,0,57,57,56,0,0,3,2,1.0,0,55,55,54,0,0,3,2,1.0,0,53,53,52,0,0,3,2,1.0,0,51,51,50,0,0,3,2,1.0,0,49,49,48,0,0,3,2,1.0,0,47,47,46,0,0,3,2,1.0,0,45,45,44,0,0,3,2,1.0,0,43,43,42,0,0,3,2,1.0,0,41,41,40,0,0,3,2,1.0,0,39,39,38,0,0,3,2,1.0,0,37,37,36,0,0,3,2,1.0,0,35,35,34,0,0,3,2,1.0,0,33,33,32,0,0,3,2,1.0,0,31,31,30,0,0,3,2,1.0,0,29,29,28,0,0,3,2,1.0,0,27,27,26,0,0,3,2,1.0,0,25,25,24,0,0,3,2,1.0,0,23,23,22,0,0,3,2,1.0,0,21,21,20,0,0,3,2,1.0,0,19,19,18,0,0,3,2,1.0,0,17,17,16,0,0,3,2,1.0,0,15,15,14,0,0,3,2,1.0,0,13,13,12,0,0,3,2,1.0,0,11,11,10,0,0,3,2,1.0,0,9,9,8,0,0,3,2,1.0,0,7,7,6,0,0,3,2,1.0,0,5,5,4,0,0,3,2,50,1,["java.util.ArrayList/4159755760","org.eaglei.ui.gwt.suggest.DataSuggestion/49807868","org.eaglei.suggest.EntityMatch/3727686613","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Ecancer\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","penn state hershey cancer institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E animal resource program","penn state hershey animal resource program","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E medical center","penn state hershey medical center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E of the neurosciences","penn state institute of the neurosciences","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3Es of energy and the environment","penn state institutes of energy and the environment","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E school of law","penn state school of law","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E data center","pennsylvania state data center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E agriculture and environment center","penn state agriculture and environment center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E erie, the behrend campus","penn state erie, the behrend campus","the \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E university","the pennsylvania state university","\x3Cspan class\x3D\x27termHighlight\x27\x3Ecancer\x3C/span\x3E","cancer","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E of \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E and regional affairs","institute of state and regional affairs","applied energy research center at \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3E \x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E behrend","applied energy research center at penn state behrend","\x3Cspan class\x3D\x27termHighlight\x27\x3Estate\x3C/span\x3E of \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania department of health commonwealth universal research enhancement (cure) awards","state of pennsylvania department of health commonwealth universal research enhancement (cure) awards","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E campus","hershey campus","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E medical center clinical laboratories","hershey medical center clinical laboratories","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Ey kris-etherton","penny kris-etherton","prevention research center alcohol and skin \x3Cspan class\x3D\x27termHighlight\x27\x3Ecancer\x3C/span\x3E projects","prevention research center alcohol and skin cancer projects","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania twin registry","pennsylvania twin registry","ems energy \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","ems energy institute","e-education \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","e-education institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Ehershey\x3C/span\x3E medical center clinical research center","hershey medical center clinical research center","central \x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania laboratory for biofuels","central pennsylvania laboratory for biofuels","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania housing research center","pennsylvania housing research center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania water resources research center","pennsylvania water resources research center","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania space grant consortium","pennsylvania space grant consortium","\x3Cspan class\x3D\x27termHighlight\x27\x3Epenn\x3C/span\x3Esylvania college of technology","pennsylvania college of technology","sustainability \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","sustainability institute","population research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","population research institute","diabetes and obesity \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","diabetes and obesity institute","genomics sciences \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","genomics sciences institute","gear research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","gear research institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for cyberscience","institute for cyberscience","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E of the neurosciences","institute of the neurosciences","materials research \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","materials research institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for the arts and humanities","institute for the arts and humanities","earth and environmental systems \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","earth and environmental systems institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for personalized  medicine","institute for personalized  medicine","hospitality leadership \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","hospitality leadership institute","facilities engineering \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","facilities engineering institute","environment and natural resources \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","environment and natural resources institute","engineering energy \x26amp; environmental \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","engineering energy \x26 environmental institute","larson transportation \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E","larson transportation institute","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for gravitation and the cosmos","institute for gravitation and the cosmos","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for the study of business markets","institute for the study of business markets","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for real estate studies","institute for real estate studies","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E for the study of adult literacy","institute for the study of adult literacy","\x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3E of molecular evolutionary genetics","institute of molecular evolutionary genetics","the huck \x3Cspan class\x3D\x27termHighlight\x27\x3Einstitute\x3C/span\x3Es of the life sciences","the huck institutes of the life sciences"],0,7]


REQUEST
7|0|10|https://eagle-i.ctsi.psu.edu/institution/institution/|2FD0E0FCCFB6942DA4DEBA56C60CB75A|org.eaglei.ui.gwt.search.rpc.SearchServiceRemote|search|java.lang.String/2004016611|org.eaglei.search.provider.SearchRequest/2568535741|79616498-41d0-4af9-8ee3-51066126bd84|org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810|org.eaglei.search.provider.SearchRequest$Term/132458229|penn state hershey cancer institute|1|2|3|4|2|5|6|7|6|0|10|0|0|0|0|8|0|0|9|10|0|

RESPONSE
//OK[0,0,0,0,8,0,7,6,0,0,5,0,0,0,0,10,0,4,0,3,0,2,0,0,1,["org.eaglei.ui.gwt.search.rpc.ClientSearchResultSet/802573315","java.util.HashMap/1797211028","org.eaglei.search.provider.SearchResultSet/3755269407","org.eaglei.search.provider.SearchRequest/2568535741","org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810","org.eaglei.search.provider.SearchRequest$Term/132458229","penn state hershey cancer institute","java.util.ArrayList/4159755760"],0,7]


REQUEST
7|0|4|https://eagle-i.ctsi.psu.edu/institution/institution/|2FD0E0FCCFB6942DA4DEBA56C60CB75A|org.eaglei.ui.gwt.search.rpc.SearchServiceRemote|getFailedHarvesterInstitutions|1|2|3|4|0|

RESPONSE
//OK[0,1,["java.util.ArrayList/4159755760"],0,7]


REQUEST
7|0|10|https://eagle-i.ctsi.psu.edu/institution/institution/|2FD0E0FCCFB6942DA4DEBA56C60CB75A|org.eaglei.ui.gwt.search.rpc.SearchServiceRemote|getResourceCounts|java.lang.String/2004016611|org.eaglei.search.provider.SearchRequest/2568535741|79616498-41d0-4af9-8ee3-51066126bd84|org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810|org.eaglei.search.provider.SearchRequest$Term/132458229|penn state hershey cancer institute|1|2|3|4|2|5|6|7|6|0|10|0|0|0|0|8|0|0|9|10|0|

RESPONSE
//OK[0,0,0,7,6,0,0,5,0,0,0,0,10,0,4,0,0,0,0,0,0,3,2,0,1,["org.eaglei.search.provider.ClassCountResult/1700747181","org.eaglei.search.provider.CountResult/1260450194","java.lang.Integer/3438268394","org.eaglei.search.provider.SearchRequest/2568535741","org.eaglei.search.provider.SearchRequest$SearchSortOrder/2245765810","org.eaglei.search.provider.SearchRequest$Term/132458229","penn state hershey cancer institute"],0,7]

Thanks,
    Joshua Lease
    Penn State Hershey
_______________________________________________
Eagle-i-admins mailing list
Eagle-i-admins at open.med.harvard.edu<mailto:Eagle-i-admins at open.med.harvard.edu>
https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins

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From jrobertson3 at hmc.psu.edu  Mon Feb  2 10:17:46 2015
From: jrobertson3 at hmc.psu.edu (Robertson, Jim)
Date: Mon, 2 Feb 2015 15:17:46 +0000
Subject: [Eagle-i-admins] Issues with using search terms
Message-ID: <E0D242EE124703459860A8F383A93B3F018EA346C2@EXMBX3.mshmc.local>

Admins,
  Has anyone experienced either of the following issues using search functionality and, if so, found a resolution:

1)      System-supplied search term suggestions do not find any matches (makes me wonder why they are included - would expect this set to only contain terms which have a non-null result).  Example: carum carvi.

2)      Multi-term system-supplied suggestions are treated with 'OR' between terms (I understand that is the default when entering the terms in the search box, but would have expected system-generated terms to be treated as an AND-ed string).  Example: typing 'heather' brings up 'heather flower', clicking on this brings up several pages of results with either 'heather' or 'flower';  typing "heather flower" in the search box with quotes brings up 0 results.

Thanks,
Jim Robertson
Penn State Hershey

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From jfurfey at mbl.edu  Wed Feb 11 15:40:14 2015
From: jfurfey at mbl.edu (John Furfey)
Date: Wed, 11 Feb 2015 15:40:14 -0500
Subject: [Eagle-i-admins] Dev instance on AWS not restarting properly
Message-ID: <82B4E420-096B-4CBC-B10B-542AF4550295@mbl.edu>

Hello,

We have a development instance running on AWS.  I recently had to stop the instance and start it again via the EC2 Dashboard.  Within the Dashboard all indicators show the app should be fine.

But I get a 'connection refused? from the browser.  Any ideas why the web app won?t start?

Here?s the output from the console when it restarts.

-bash-4.1# tail -f /var/log/bootstrap.log
2015-02-11T19:39:15Z: bootstrap.sh: prepare for ansible bootstrapping
2015-02-11T19:39:15Z: bootstrap.sh: skipping ansible run because it already ran successfully
2015-02-11T20:14:55Z: bootstrap.sh: starting
2015-02-11T20:14:55Z: bootstrap.sh: make sure we are running as root
2015-02-11T20:14:55Z: bootstrap.sh: install iptables(8) rules to redirect port 80 -> 8080 and 443 -> 8443
2015-02-11T20:14:55Z: bootstrap.sh: don't require a tty for sudo(8)
2015-02-11T20:14:55Z: bootstrap.sh: setup EBS volume to house /opt/eaglei
2015-02-11T20:14:55Z: bootstrap.sh: setup 8GB swap file in /swapfile
2015-02-11T20:14:55Z: bootstrap.sh: prepare for ansible bootstrapping
2015-02-11T20:14:55Z: bootstrap.sh: skipping ansible run because it already ran successfully





-------------------------------------------------------------
John Furfey
Senior Automation Services Officer
MBLWHOI Library
Woods Hole, MA 02543 USA
PHONE:  508-289-7435
EMAIL:  jfurfey at mbl.edu
http://www.mblwhoilibrary.org
ORCID:  http://orcid.org/0000-0002-1077-1680





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From David_Neiman at hms.harvard.edu  Thu Feb 12 10:50:47 2015
From: David_Neiman at hms.harvard.edu (Neiman, David)
Date: Thu, 12 Feb 2015 10:50:47 -0500
Subject: [Eagle-i-admins] Dev instance on AWS not restarting properly
In-Reply-To: <E5482DF4-B435-4D59-B9AA-C38B6B1CBBB4@mbl.edu>
References: <82B4E420-096B-4CBC-B10B-542AF4550295@mbl.edu>
	<4B084CE9-2641-4333-B221-42F16BBA09DF@hms.harvard.edu>
	<E5482DF4-B435-4D59-B9AA-C38B6B1CBBB4@mbl.edu>
Message-ID: <BE12B523-3A37-40BC-9BE5-BCDDAE10A997@hms.harvard.edu>

John,

Glad to hear you were able to resolve the issue. And thanks for the update on how you accomplished this.

Best,
Dave


On Feb 12, 2015, at 10:41 AM, John Furfey <jfurfey at mbl.edu<mailto:jfurfey at mbl.edu>> wrote:

David,

Thanks for the reply.  The problem is solved.

After restarting the instance on AWS, I had to ssh into the application and manually restart Tomcat.


-------------------------------------------------------------
John Furfey
Senior Automation Services Officer
MBLWHOI Library
Woods Hole, MA 02543 USA
PHONE:  508-289-7435
EMAIL:  jfurfey at mbl.edu<mailto:jfurfey at mbl.edu>
http://www.mblwhoilibrary.org<http://www.mblwhoilibrary.org/>
ORCID:  http://orcid.org/0000-0002-1077-1680





On Feb 12, 2015, at 10:38 AM, Neiman, David <David_Neiman at hms.harvard.edu<mailto:David_Neiman at hms.harvard.edu>> wrote:

Hi John,

Thanks for contacting us. We will look into this and get back to you within a few days.

Best,
Dave Neiman
eagle-i team

On Feb 11, 2015, at 3:40 PM, John Furfey <jfurfey at mbl.edu<mailto:jfurfey at mbl.edu>> wrote:

Hello,

We have a development instance running on AWS.  I recently had to stop the instance and start it again via the EC2 Dashboard.  Within the Dashboard all indicators show the app should be fine.

But I get a 'connection refused? from the browser.  Any ideas why the web app won?t start?

Here?s the output from the console when it restarts.

-bash-4.1# tail -f /var/log/bootstrap.log
2015-02-11T19:39:15Z: bootstrap.sh: prepare for ansible bootstrapping
2015-02-11T19:39:15Z: bootstrap.sh: skipping ansible run because it already ran successfully
2015-02-11T20:14:55Z: bootstrap.sh: starting
2015-02-11T20:14:55Z: bootstrap.sh: make sure we are running as root
2015-02-11T20:14:55Z: bootstrap.sh: install iptables(8) rules to redirect port 80 -> 8080 and 443 -> 8443
2015-02-11T20:14:55Z: bootstrap.sh: don't require a tty for sudo(8)
2015-02-11T20:14:55Z: bootstrap.sh: setup EBS volume to house /opt/eaglei
2015-02-11T20:14:55Z: bootstrap.sh: setup 8GB swap file in /swapfile
2015-02-11T20:14:55Z: bootstrap.sh: prepare for ansible bootstrapping
2015-02-11T20:14:55Z: bootstrap.sh: skipping ansible run because it already ran successfully





-------------------------------------------------------------
John Furfey
Senior Automation Services Officer
MBLWHOI Library
Woods Hole, MA 02543 USA
PHONE:  508-289-7435
EMAIL:  jfurfey at mbl.edu<mailto:jfurfey at mbl.edu>
http://www.mblwhoilibrary.org<http://www.mblwhoilibrary.org/>
ORCID:  http://orcid.org/0000-0002-1077-1680





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From fcoldren at mail.med.upenn.edu  Tue Feb 24 11:18:06 2015
From: fcoldren at mail.med.upenn.edu (Faith Coldren)
Date: Tue, 24 Feb 2015 11:18:06 -0500
Subject: [Eagle-i-admins] Publish locally
Message-ID: <CAO8PZtCJuC5YRDCM6cvcJxW_fzx5YZ-84+ZV9T9GLvaEaiD_FQ@mail.gmail.com>

Hi,

How can I install the "Publish locally" feature in eagle-i?

Faith
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