[Eagle-i-admins] [ eagle-i-admins ] Broken link in SWEET when upgrading to 3.4.2, public sparqler issues

[Sukdith Punjasthitkul]

Hi Sophia, 

RE: ontology browser link fix, sounds good. 

RE: SPARQLer, we're not running a cron job for SPARQL endpoint. My understanding was that an update summary was outputted to eagle-i-sparqler.last-sync-date.properties, which is currently not the case. Also, I've been unsuccessful in performing a manual synchronization using synchronize-sparqler.sh. 

--sukie--



> On Mar 31, 2015, at 12:09 PM, Cheng, Sophia <Sophia_Cheng at hms.harvard.edu> wrote:
> 
> Hi Sukie,
> 
> We are aware of the broken ontology browser link.  That is currently being fixed.  When it is, a restart of the node should pull in the correct link information. We’ll let you know when that’s ready.
> 
> Regarding the public sparqler, we think you may have an out dated cron job hanging around. In a much earlier iteration of the public SPARQL endpoint, the installation instructions included setting up a crontab to perform the synchronization.  We no longer need this, the synchronization is now handled by the public SPARQLer itself.  (Old documentation here: https://open.med.harvard.edu/wiki/pages/viewpage.action?pageId=10190875)
> 
> Removing the cron job and then restarting should do the trick.
> 
> Let us know if that isn’t the case.
> 
> Thanks!
> -Sophia
> 
> 
>> On Mar 31, 2015, at 10:34 AM, Sukdith Punjasthitkul <Sukdith.Punjasthitkul at dartmouth.edu> wrote:
>> 
>> We just updated to version 3.4.2 and noticed that in SWEET, the Ontology Browser link is broken. 
>> It currently points to:
>> 
>> https://dartmouth.eagle-i.net:8443/sweet/default_value/model/
>> 
>> I'm getting a 404 Error: "The requested resource (/sweet/default_value/model/) is not available."
>> 
>> We are also running into issues trying to synchronize the public sparqler. Running synchronize-sparqler.sh resulted in the following error: 
>> 
>> Error: Main method not found in class org.eaglei.repository.sparqler.SynchronizerCommand, please define the main method as:
>>   public static void main(String[] args)
>> 
>> I updated the sparqler by turning off Tomcat, deleting the .war and sparqler/ file from $CATALINA_HOME/webapps/, copying over sparqler.war file from repo/webapps/, and then starting Tomcat up. I did not recreate the Sparqler admin or finish-install steps. Does updating sparqler require rebuilding the repo users as well?
>> 
>> --sukie--
>> 
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