[Eagle-i-admins] Auto-complete in SWEET not working and Ontology Browser down

[Faith Coldren]

Understood. Thank you!

Faith Coldren, PhD
Biomedical Data Curator
ITMAT
University of Pennsylvania
215-573-9462
************************************
Discover.Accelerate.Promote
https://eagle-i.itmat.upenn.edu


On Wed, Feb 26, 2014 at 2:30 PM, Cheng, Sophia <Sophia_Cheng at hms.harvard.edu
> wrote:

> Hi Faith,
>
> If your ontology browser is working, then there's no need to worry about
> the "work" directory.  That might have just been a weird edge case in our
> servers.
>
> Sincerely,
> Sophia
>
>
> On Feb 26, 2014, at 2:27 PM, Faith Coldren <fcoldren at mail.med.upenn.edu>
> wrote:
>
> Hi Sophia,
>
> We restarted tomcat, and now the ontology browser link is functional.
>
> However, we don't see a directory called "work" under ~tomcat. There is a
> "work" directory under /opt/tomcat/ and inside this directory is another
> directory called "Catalina".
>
> Directory structure of ~tomcat:
>
> /usr/share/tomcat6/
> ├── bin
> └── eaglei
>     └── sparqler
>         ├── logs
>         └── sesame
>
> Directory structure of /opt/tomcat/work:
>
> /opt/tomcat/work/
> └── Catalina
>     └── localhost
>         ├── _
>         │   └── org
>         │       └── apache
>         │           └── jsp
>         │               └── repository
>         │                   ├── admin
>         │                   ├── logout
>         │                   └── query
>         ├── ${catalina.base}
>         ├── docs
>         ├── examples
>         ├── help
>         ├── host-manager
>         ├── institution
>         ├── manager
>         │   └── org
>         │       └── apache
>         │           └── jsp
>         │               └── WEB_002dINF
>         │                   └── jsp
>         ├── ROOT.orig
>         ├── sparqler
>         │   └── org
>         │       └── apache
>         │           └── jsp
>         │               ├── query
>         │               └── repository
>         │                   └── admin
>         └── sweet
>             └── org
>                 └── apache
>                     └── jsp
>                         ├── cores
>                         ├── feedback
>                         └── labs
>
> Should we delete /opt/tomcat/work?
>
> Thanks,
> Faith
>
> Faith Coldren, PhD
> Biomedical Data Curator
> ITMAT
> University of Pennsylvania
> 215-573-9462
> ************************************
> Discover.Accelerate.Promote
> https://eagle-i.itmat.upenn.edu
>
>
> On Wed, Feb 26, 2014 at 10:54 AM, Cheng, Sophia <
> Sophia_Cheng at hms.harvard.edu> wrote:
>
>> Hi Faith,
>>
>> The issue you were seeing with the ontology browser was due to a
>> misconfiguration on our part (the navigation is pulling in the navigation
>> from our server).  We have fixed this and pushed the fix to the production
>> tier.
>>
>> You will need to restart to pick up this change.  When you restart, be
>> sure to delete this folder ~tomcat/work.  This is tomcat's working folder
>> and we noticed that it was caching the link for the navigation.
>>
>> Thanks for your patience.  Please let us know if you continue to have
>> trouble with the ontology browser link in the top navigation.
>>
>> Sincerely,
>> Sophia
>>
>> On Jan 31, 2014, at 5:10 PM, "Cherry, Michael" <
>> Michael_Cherry at hms.harvard.edu> wrote:
>>
>> >> I updated property value for eagle.model.url.
>> >> This fixed the problem.
>> >
>> >> Could you suggest where I should change the Ontology
>> >> Browser link for the header in SWEET so that users
>> >> have a functioning link?
>> >
>> > Hi Faith,
>> >
>> > I'm not sure but I don't know if the links in the application headers
>> are locally configurable.
>> >
>> > We'll get an answer to you within the next few days.
>> >
>> > - Mike C
>> >
>> >
>> > _______________________________________________
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>> > Eagle-i-admins at open.med.harvard.edu
>> > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>>
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>
>
>
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