[Eagle-i-admins] Auto-complete in SWEET not working and Ontology Browser down

[Faith Coldren]

Hi Sophia,

We restarted tomcat, and now the ontology browser link is functional.

However, we don't see a directory called "work" under ~tomcat. There is a
"work" directory under /opt/tomcat/ and inside this directory is another
directory called "Catalina".

Directory structure of ~tomcat:

/usr/share/tomcat6/
├── bin
└── eaglei
    └── sparqler
        ├── logs
        └── sesame

Directory structure of /opt/tomcat/work:

/opt/tomcat/work/
└── Catalina
    └── localhost
        ├── _
        │   └── org
        │       └── apache
        │           └── jsp
        │               └── repository
        │                   ├── admin
        │                   ├── logout
        │                   └── query
        ├── ${catalina.base}
        ├── docs
        ├── examples
        ├── help
        ├── host-manager
        ├── institution
        ├── manager
        │   └── org
        │       └── apache
        │           └── jsp
        │               └── WEB_002dINF
        │                   └── jsp
        ├── ROOT.orig
        ├── sparqler
        │   └── org
        │       └── apache
        │           └── jsp
        │               ├── query
        │               └── repository
        │                   └── admin
        └── sweet
            └── org
                └── apache
                    └── jsp
                        ├── cores
                        ├── feedback
                        └── labs

Should we delete /opt/tomcat/work?

Thanks,
Faith

Faith Coldren, PhD
Biomedical Data Curator
ITMAT
University of Pennsylvania
215-573-9462
************************************
Discover.Accelerate.Promote
https://eagle-i.itmat.upenn.edu


On Wed, Feb 26, 2014 at 10:54 AM, Cheng, Sophia <
Sophia_Cheng at hms.harvard.edu> wrote:

> Hi Faith,
>
> The issue you were seeing with the ontology browser was due to a
> misconfiguration on our part (the navigation is pulling in the navigation
> from our server).  We have fixed this and pushed the fix to the production
> tier.
>
> You will need to restart to pick up this change.  When you restart, be
> sure to delete this folder ~tomcat/work.  This is tomcat's working folder
> and we noticed that it was caching the link for the navigation.
>
> Thanks for your patience.  Please let us know if you continue to have
> trouble with the ontology browser link in the top navigation.
>
> Sincerely,
> Sophia
>
> On Jan 31, 2014, at 5:10 PM, "Cherry, Michael" <
> Michael_Cherry at hms.harvard.edu> wrote:
>
> >> I updated property value for eagle.model.url.
> >> This fixed the problem.
> >
> >> Could you suggest where I should change the Ontology
> >> Browser link for the header in SWEET so that users
> >> have a functioning link?
> >
> > Hi Faith,
> >
> > I'm not sure but I don't know if the links in the application headers
> are locally configurable.
> >
> > We'll get an answer to you within the next few days.
> >
> > - Mike C
> >
> >
> > _______________________________________________
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> > Eagle-i-admins at open.med.harvard.edu
> > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>
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