[Eagle-i-admins] New process and data migration issues & clarification of properties [2.0-MS2.14]

[Angel Pizarro]

The update ran fine for us once we took care of the changed values in the
respective properties files. -angel


On Thu, Aug 8, 2013 at 3:45 PM, Cheng, Sophia
<Sophia_Cheng at hms.harvard.edu>wrote:

> Faith,
>
> Have you had trouble using the data migration script with the latest
> (2.0-MS2.14) version?
>
> -Sophia
>
> From: Faith Coldren <fcoldren at mail.med.upenn.edu>
> Date: Thursday, August 8, 2013 3:43 PM
> To: Sophia <sophia_cheng at hms.harvard.edu>
> Cc: "Tolmie, David A" <dtolmie at fhcrc.org>, "
> eagle-i-admins at open.med.harvard.edu" <eagle-i-admins at open.med.harvard.edu>,
> "ross.davis at Vanderbilt.Edu" <ross.davis at vanderbilt.edu>, "
> angel at itmat.upenn.edu" <angel at itmat.upenn.edu>, "
> fcoldren at mail.med.upenn.edu" <fcoldren at mail.med.upenn.edu>, "
> sukie at dartmouth.edu" <sukie at dartmouth.edu>, "Neiman, David" <
> David_Neiman at hms.harvard.edu>, "Cole, Julian C" <
> Julian_Cole at hms.harvard.edu>, "Ciriello, Marc" <
> Marc_Ciriello at hms.harvard.edu>
>
> Subject: Re: [Eagle-i-admins] New process and data migration issues &
> clarification of properties [2.0-MS2.14]
>
> We aren't running java 1.6. We have the following configuration:
>
> java version "1.7.0_05-icedtea"
> OpenJDK Runtime Environment (rhel-2.2.1.el6_3.3-x86_64)
> OpenJDK 64-Bit Server VM (build 23.0-b21, mixed mode)
>
>
> On Thu, Aug 8, 2013 at 3:07 PM, Cheng, Sophia <
> Sophia_Cheng at hms.harvard.edu> wrote:
>
>> Hello everyone,
>>
>> This is a bit of a shot in the dark, but has anyone else running java 1.6
>> with OpenJDK as the Java?  If so, have you been able to run the migration
>> scripts?
>>
>> Sincerely,
>> Sophia
>>
>> From: <Tolmie>, David A <dtolmie at fhcrc.org>
>> Date: Thursday, August 8, 2013 1:21 PM
>> To: "eagle-i-admins at open.med.harvard.edu" <
>> eagle-i-admins at open.med.harvard.edu>, "ross.davis at Vanderbilt.Edu" <
>> ross.davis at Vanderbilt.Edu>, "angel at itmat.upenn.edu" <
>> angel at itmat.upenn.edu>, "fcoldren at mail.med.upenn.edu" <
>> fcoldren at mail.med.upenn.edu>, "sukie at dartmouth.edu" <sukie at dartmouth.edu>
>> Cc: "Neiman, David" <David_Neiman at hms.harvard.edu>, "Cole, Julian C" <
>> Julian_Cole at hms.harvard.edu>, "Ciriello, Marc" <
>> Marc_Ciriello at hms.harvard.edu>
>> Subject: Re: [Eagle-i-admins] New process and data migration issues &
>> clarification of properties [2.0-MS2.14]
>>
>> Hi folks,
>>
>> I'm back to trying to upgrade eagle-I, and I'm receiving the same kind of
>> output as before when running the data migration script.  See attached.
>>  The script claims to have run successfully, but shows command usage info
>> as if underlying commands were not called correctly.  Nothing was written
>> to any of the logs.
>>
>> I'm doing this with the repository and data migrations tools from
>> 2.0-MS2.16 this time.  I made certain there were no old instances of
>> the eagle-i-datatools-datamanagement.jar before downloading the jar for the
>> newest release.
>>
>> Any thoughts or suggestions?
>>
>> Thanks,
>>
>> -Dave
>>
>> ------------------------------
>>
>> David Tolmie****
>>
>> *Systems Librarian**                ***
>>
>> *Arnold Library | Fred Hutchinson Cancer Research Center | Seattle, WA*
>>
>> *dtolmie at fhcrc.org  |  tel 206.667.6852 |  fax 206.667.4737***
>>
>> [image: Description: Description: Description: Description: AL-Logo-color]<http://library.fhcrc.org/>
>> ****
>>
>> ** **
>>
>> From: <Cheng>, "Cheng, Sophia" <Sophia_Cheng at hms.harvard.edu>
>> Reply-To: "eagle-i-admins at open.med.harvard.edu" <
>> eagle-i-admins at open.med.harvard.edu>
>> Date: Tuesday, July 23, 2013 4:51 PM
>> To: David Tolmie <dtolmie at fhcrc.org>, "ross.davis at Vanderbilt.Edu" <
>> ross.davis at Vanderbilt.Edu>, "angel at itmat.upenn.edu" <
>> angel at itmat.upenn.edu>, "fcoldren at mail.med.upenn.edu" <
>> fcoldren at mail.med.upenn.edu>, "sukie at dartmouth.edu" <sukie at dartmouth.edu>
>> Cc: "Ciriello, Marc" <Marc_Ciriello at hms.harvard.edu>, "Bourges, Daniela"
>> <Daniela_Bourges at hms.harvard.edu>, "Cole, Julian C" <
>> Julian_Cole at hms.harvard.edu>, "Neiman, David" <
>> David_Neiman at hms.harvard.edu>, "eagle-i-admins at open.med.harvard.edu" <
>> eagle-i-admins at open.med.harvard.edu>
>> Subject: New process and data migration issues & clarification of
>> properties [2.0-MS2.14]
>>
>> Now, regarding some of the issues that have been encountered:
>> (1) Some of you have reported having issues running the data-migration.sh
>> for the latest release, 2.0-MS2.14.  This issue manifests with notification
>> of incorrect/missing parameters during the execution of the script, but the
>> script does not fail.  The output looks similar to the attached file.  I
>> have been unable to reproduce the error using the files that were mentioned
>> in the initial email:
>> Datamangement Toolkit -
>> http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-datatools-datamanagement/
>>
>> Repository -
>> http://infra.search.eagle-i.net:8081/nexus/content/repositories/releases/org/eagle-i/eagle-i-repository-dist/
>>
>>
>> Not everyone has run into this problem, so I'm wondering if I could ask
>> those of you who have had problems to remove your existing
>> eagle-i-datatools-datamanagement.jar, re-download the jar and try the
>> script again.
>>
>
>
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