From Russel.Ingram at systemsbiology.org  Wed May  2 16:49:06 2012
From: Russel.Ingram at systemsbiology.org (Russel Ingram)
Date: Wed, 2 May 2012 13:49:06 -0700
Subject: [Eagle-i-admins] Need assistance getting eagle-i running properly
Message-ID: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>

The facilities group at my institution has decided they'd like to use
eagle-i to track recourses here at ISB and I've been tasked with getting it
installed and working for them. I've been able to follow the instructions
here:
https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand
here:
https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto
get the system installed, but getting it configured so that everything
works together like it's supposed to doesn't seem to be very well
documented. I think I figured out that you have to configure Apache to
proxy requests for http:// and https:// to http://:8080 and
https://8443respectively and that seems to make logins to the search
application work,
but whenever we click on one of the resources listed after logging into the
search app, it kicks us back to the login screen and we have to go back to
the base URL in order for our logins to work again. Is there anyone that
can help me figure out what I don't have configured right?

Thanks,
Russ
---
Russel Ingram
Associate Systems Administrator
Institute for Systems Biology
401 Terry Ave N
+1 206 732 2140
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From Daniela_Bourges at hms.harvard.edu  Thu May  3 08:48:24 2012
From: Daniela_Bourges at hms.harvard.edu (Bourges, Daniela)
Date: Thu, 3 May 2012 08:48:24 -0400
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
 properly
In-Reply-To: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
Message-ID: <BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>

Hi Russel, 

Please make sure that you have created your "anonymous" user in the repository, to be used by the search application. You can name it e.g. "search", and it should have *no*  roles. Then edit the file whoami.xml to reflect these credentials, in the following section:

<!--
REQUIRED: username for anonymous access to the repository
-->
<anonUser>search</anonUser>
<!--
REQUIRED: password for anonymous access to the repository
-->
<anonPassword>xxxxx</anonPassword>



Let me know how it goes. 

Cheers
Daniela


Dr. Daniela Bourges-Waldegg
System Architect, eagle-i @ Harvard University

Daniela_Bourges at hms.harvard.edu
skype: dbourgesw
phone: 617-384-8891

On May 2, 2012, at 16:49 , Russel Ingram wrote:

> The facilities group at my institution has decided they'd like to use eagle-i to track recourses here at ISB and I've been tasked with getting it installed and working for them. I've been able to follow the instructions here:
> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guide and here: https://open.med.harvard.edu/display/eaglei/Application+Installation+Guide to get the system installed, but getting it configured so that everything works together like it's supposed to doesn't seem to be very well documented. I think I figured out that you have to configure Apache to proxy requests for http:// and https:// to http://:8080 and https://8443 respectively and that seems to make logins to the search application work, but whenever we click on one of the resources listed after logging into the search app, it kicks us back to the login screen and we have to go back to the base URL in order for our logins to work again. Is there anyone that can help me figure out what I don't have configured right?
> 
> Thanks,
> Russ
> ---
> Russel Ingram
> Associate Systems Administrator
> Institute for Systems Biology
> 401 Terry Ave N
> +1 206 732 2140
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins








From Russel.Ingram at systemsbiology.org  Thu May  3 11:08:14 2012
From: Russel.Ingram at systemsbiology.org (Russel Ingram)
Date: Thu, 3 May 2012 08:08:14 -0700
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
In-Reply-To: <BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
Message-ID: <CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>

I named the anonymous user anonymous and set his password to anonymous to
keep it simple. That's what's already in the whoami.xml file.

Russ
---
Russel Ingram
Associate Systems Administrator
Institute for Systems Biology
401 Terry Ave N
+1 206 732 2140


On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <
Daniela_Bourges at hms.harvard.edu> wrote:

> Hi Russel,
>
> Please make sure that you have created your "anonymous" user in the
> repository, to be used by the search application. You can name it e.g.
> "search", and it should have *no*  roles. Then edit the file whoami.xml to
> reflect these credentials, in the following section:
>
> <!--
> REQUIRED: username for anonymous access to the repository
> -->
> <anonUser>search</anonUser>
> <!--
> REQUIRED: password for anonymous access to the repository
> -->
> <anonPassword>xxxxx</anonPassword>
>
>
>
> Let me know how it goes.
>
> Cheers
> Daniela
>
>
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
>
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
>
> On May 2, 2012, at 16:49 , Russel Ingram wrote:
>
> > The facilities group at my institution has decided they'd like to use
> eagle-i to track recourses here at ISB and I've been tasked with getting it
> installed and working for them. I've been able to follow the instructions
> here:
> >
> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand here:
> https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto get the system installed, but getting it configured so that everything
> works together like it's supposed to doesn't seem to be very well
> documented. I think I figured out that you have to configure Apache to
> proxy requests for http:// and https:// to http://:8080 and https://8443respectively and that seems to make logins to the search application work,
> but whenever we click on one of the resources listed after logging into the
> search app, it kicks us back to the login screen and we have to go back to
> the base URL in order for our logins to work again. Is there anyone that
> can help me figure out what I don't have configured right?
> >
> > Thanks,
> > Russ
> > ---
> > Russel Ingram
> > Associate Systems Administrator
> > Institute for Systems Biology
> > 401 Terry Ave N
> > +1 206 732 2140
> > _______________________________________________
> > Eagle-i-admins mailing list
> > Eagle-i-admins at open.med.harvard.edu
> > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>
>
>
>
>
>
>
>
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From Daniela_Bourges at hms.harvard.edu  Thu May  3 11:13:23 2012
From: Daniela_Bourges at hms.harvard.edu (Bourges, Daniela)
Date: Thu, 3 May 2012 11:13:23 -0400
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
 properly
In-Reply-To: <CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
	<CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
Message-ID: <CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>

Can you also make sure you have the latest release, 1.6MS6.03?

For the future, please be more specific about your particular context so we can better assist you.

Best
Daniela

Dr. Daniela Bourges-Waldegg
System Architect, eagle-i @ Harvard University

Daniela_Bourges at hms.harvard.edu
skype: dbourgesw
phone: 617-384-8891

On May 3, 2012, at 11:08 , Russel Ingram wrote:

> I named the anonymous user anonymous and set his password to anonymous to keep it simple. That's what's already in the whoami.xml file. 
> 
> Russ
> ---
> Russel Ingram
> Associate Systems Administrator
> Institute for Systems Biology
> 401 Terry Ave N
> +1 206 732 2140
> 
> 
> On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <Daniela_Bourges at hms.harvard.edu> wrote:
> Hi Russel,
> 
> Please make sure that you have created your "anonymous" user in the repository, to be used by the search application. You can name it e.g. "search", and it should have *no*  roles. Then edit the file whoami.xml to reflect these credentials, in the following section:
> 
> <!--
> REQUIRED: username for anonymous access to the repository
> -->
> <anonUser>search</anonUser>
> <!--
> REQUIRED: password for anonymous access to the repository
> -->
> <anonPassword>xxxxx</anonPassword>
> 
> 
> 
> Let me know how it goes.
> 
> Cheers
> Daniela
> 
> 
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
> 
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
> 
> On May 2, 2012, at 16:49 , Russel Ingram wrote:
> 
> > The facilities group at my institution has decided they'd like to use eagle-i to track recourses here at ISB and I've been tasked with getting it installed and working for them. I've been able to follow the instructions here:
> > https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guide and here: https://open.med.harvard.edu/display/eaglei/Application+Installation+Guide to get the system installed, but getting it configured so that everything works together like it's supposed to doesn't seem to be very well documented. I think I figured out that you have to configure Apache to proxy requests for http:// and https:// to http://:8080 and https://8443 respectively and that seems to make logins to the search application work, but whenever we click on one of the resources listed after logging into the search app, it kicks us back to the login screen and we have to go back to the base URL in order for our logins to work again. Is there anyone that can help me figure out what I don't have configured right?
> >
> > Thanks,
> > Russ
> > ---
> > Russel Ingram
> > Associate Systems Administrator
> > Institute for Systems Biology
> > 401 Terry Ave N
> > +1 206 732 2140
> > _______________________________________________
> > Eagle-i-admins mailing list
> > Eagle-i-admins at open.med.harvard.edu
> > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
> 
> 
> 
> 
> 
> 
> 
> 

Dr. Daniela Bourges-Waldegg
System Architect, eagle-i @ Harvard University

Daniela_Bourges at hms.harvard.edu
skype: dbourgesw
phone: 617-384-8891






From Russel.Ingram at systemsbiology.org  Thu May  3 11:15:37 2012
From: Russel.Ingram at systemsbiology.org (Russel Ingram)
Date: Thu, 3 May 2012 08:15:37 -0700
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
In-Reply-To: <CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
	<CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
	<CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
Message-ID: <CAApyYO2HNbZMNz-sinvr7D_tPmAetOrE9C98_P1Gv8FDZ1VZ-A@mail.gmail.com>

I don't think 1.6MS6.03 was available when I installed last week. I'll
download it and upgrade. Thanks.

Russ
---
Russel Ingram
Associate Systems Administrator
Institute for Systems Biology
401 Terry Ave N
+1 206 732 2140


On Thu, May 3, 2012 at 8:13 AM, Bourges, Daniela <
Daniela_Bourges at hms.harvard.edu> wrote:

> Can you also make sure you have the latest release, 1.6MS6.03?
>
> For the future, please be more specific about your particular context so
> we can better assist you.
>
> Best
> Daniela
>
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
>
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
>
> On May 3, 2012, at 11:08 , Russel Ingram wrote:
>
> > I named the anonymous user anonymous and set his password to anonymous
> to keep it simple. That's what's already in the whoami.xml file.
> >
> > Russ
> > ---
> > Russel Ingram
> > Associate Systems Administrator
> > Institute for Systems Biology
> > 401 Terry Ave N
> > +1 206 732 2140
> >
> >
> > On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <
> Daniela_Bourges at hms.harvard.edu> wrote:
> > Hi Russel,
> >
> > Please make sure that you have created your "anonymous" user in the
> repository, to be used by the search application. You can name it e.g.
> "search", and it should have *no*  roles. Then edit the file whoami.xml to
> reflect these credentials, in the following section:
> >
> > <!--
> > REQUIRED: username for anonymous access to the repository
> > -->
> > <anonUser>search</anonUser>
> > <!--
> > REQUIRED: password for anonymous access to the repository
> > -->
> > <anonPassword>xxxxx</anonPassword>
> >
> >
> >
> > Let me know how it goes.
> >
> > Cheers
> > Daniela
> >
> >
> > Dr. Daniela Bourges-Waldegg
> > System Architect, eagle-i @ Harvard University
> >
> > Daniela_Bourges at hms.harvard.edu
> > skype: dbourgesw
> > phone: 617-384-8891
> >
> > On May 2, 2012, at 16:49 , Russel Ingram wrote:
> >
> > > The facilities group at my institution has decided they'd like to use
> eagle-i to track recourses here at ISB and I've been tasked with getting it
> installed and working for them. I've been able to follow the instructions
> here:
> > >
> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand here:
> https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto get the system installed, but getting it configured so that everything
> works together like it's supposed to doesn't seem to be very well
> documented. I think I figured out that you have to configure Apache to
> proxy requests for http:// and https:// to http://:8080 and https://8443respectively and that seems to make logins to the search application work,
> but whenever we click on one of the resources listed after logging into the
> search app, it kicks us back to the login screen and we have to go back to
> the base URL in order for our logins to work again. Is there anyone that
> can help me figure out what I don't have configured right?
> > >
> > > Thanks,
> > > Russ
> > > ---
> > > Russel Ingram
> > > Associate Systems Administrator
> > > Institute for Systems Biology
> > > 401 Terry Ave N
> > > +1 206 732 2140
> > > _______________________________________________
> > > Eagle-i-admins mailing list
> > > Eagle-i-admins at open.med.harvard.edu
> > > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
> >
> >
> >
> >
> >
> >
> >
> >
>
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
>
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
>
>
>
>
>
>
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From Russel.Ingram at systemsbiology.org  Thu May  3 11:31:05 2012
From: Russel.Ingram at systemsbiology.org (Russel Ingram)
Date: Thu, 3 May 2012 08:31:05 -0700
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
In-Reply-To: <CAApyYO2HNbZMNz-sinvr7D_tPmAetOrE9C98_P1Gv8FDZ1VZ-A@mail.gmail.com>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
	<CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
	<CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
	<CAApyYO2HNbZMNz-sinvr7D_tPmAetOrE9C98_P1Gv8FDZ1VZ-A@mail.gmail.com>
Message-ID: <CAApyYO2czJAU6bvtE88ed9+42aNR_DRBT+Je4R3HrH6UPF-_vQ@mail.gmail.com>

I don't see any upgrade instructions for SWEET or the search application.
Can I just replace the sweet.war and institution.war files?

Russ
---
Russel Ingram
Associate Systems Administrator
Institute for Systems Biology
401 Terry Ave N
+1 206 732 2140


On Thu, May 3, 2012 at 8:15 AM, Russel Ingram <
Russel.Ingram at systemsbiology.org> wrote:

> I don't think 1.6MS6.03 was available when I installed last week. I'll
> download it and upgrade. Thanks.
>
> Russ
> ---
> Russel Ingram
> Associate Systems Administrator
> Institute for Systems Biology
> 401 Terry Ave N
> +1 206 732 2140
>
>
> On Thu, May 3, 2012 at 8:13 AM, Bourges, Daniela <
> Daniela_Bourges at hms.harvard.edu> wrote:
>
>> Can you also make sure you have the latest release, 1.6MS6.03?
>>
>> For the future, please be more specific about your particular context so
>> we can better assist you.
>>
>> Best
>> Daniela
>>
>> Dr. Daniela Bourges-Waldegg
>> System Architect, eagle-i @ Harvard University
>>
>> Daniela_Bourges at hms.harvard.edu
>> skype: dbourgesw
>> phone: 617-384-8891
>>
>> On May 3, 2012, at 11:08 , Russel Ingram wrote:
>>
>> > I named the anonymous user anonymous and set his password to anonymous
>> to keep it simple. That's what's already in the whoami.xml file.
>> >
>> > Russ
>> > ---
>> > Russel Ingram
>> > Associate Systems Administrator
>> > Institute for Systems Biology
>> > 401 Terry Ave N
>> > +1 206 732 2140
>> >
>> >
>> > On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <
>> Daniela_Bourges at hms.harvard.edu> wrote:
>> > Hi Russel,
>> >
>> > Please make sure that you have created your "anonymous" user in the
>> repository, to be used by the search application. You can name it e.g.
>> "search", and it should have *no*  roles. Then edit the file whoami.xml to
>> reflect these credentials, in the following section:
>> >
>> > <!--
>> > REQUIRED: username for anonymous access to the repository
>> > -->
>> > <anonUser>search</anonUser>
>> > <!--
>> > REQUIRED: password for anonymous access to the repository
>> > -->
>> > <anonPassword>xxxxx</anonPassword>
>> >
>> >
>> >
>> > Let me know how it goes.
>> >
>> > Cheers
>> > Daniela
>> >
>> >
>> > Dr. Daniela Bourges-Waldegg
>> > System Architect, eagle-i @ Harvard University
>> >
>> > Daniela_Bourges at hms.harvard.edu
>> > skype: dbourgesw
>> > phone: 617-384-8891
>> >
>> > On May 2, 2012, at 16:49 , Russel Ingram wrote:
>> >
>> > > The facilities group at my institution has decided they'd like to use
>> eagle-i to track recourses here at ISB and I've been tasked with getting it
>> installed and working for them. I've been able to follow the instructions
>> here:
>> > >
>> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand here:
>> https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto get the system installed, but getting it configured so that everything
>> works together like it's supposed to doesn't seem to be very well
>> documented. I think I figured out that you have to configure Apache to
>> proxy requests for http:// and https:// to http://:8080 and https://8443respectively and that seems to make logins to the search application work,
>> but whenever we click on one of the resources listed after logging into the
>> search app, it kicks us back to the login screen and we have to go back to
>> the base URL in order for our logins to work again. Is there anyone that
>> can help me figure out what I don't have configured right?
>> > >
>> > > Thanks,
>> > > Russ
>> > > ---
>> > > Russel Ingram
>> > > Associate Systems Administrator
>> > > Institute for Systems Biology
>> > > 401 Terry Ave N
>> > > +1 206 732 2140
>> > > _______________________________________________
>> > > Eagle-i-admins mailing list
>> > > Eagle-i-admins at open.med.harvard.edu
>> > > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>> >
>> >
>> >
>> >
>> >
>> >
>> >
>> >
>>
>> Dr. Daniela Bourges-Waldegg
>> System Architect, eagle-i @ Harvard University
>>
>> Daniela_Bourges at hms.harvard.edu
>> skype: dbourgesw
>> phone: 617-384-8891
>>
>>
>>
>>
>>
>>
>
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From sukdith.punjasthitkul at dartmouth.edu  Thu May  3 11:36:18 2012
From: sukdith.punjasthitkul at dartmouth.edu (sukdith punjasthitkul)
Date: Thu, 3 May 2012 11:36:18 -0400
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
In-Reply-To: <CAApyYO2czJAU6bvtE88ed9+42aNR_DRBT+Je4R3HrH6UPF-_vQ@mail.gmail.com>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
	<CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
	<CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
	<CAApyYO2HNbZMNz-sinvr7D_tPmAetOrE9C98_P1Gv8FDZ1VZ-A@mail.gmail.com>
	<CAApyYO2czJAU6bvtE88ed9+42aNR_DRBT+Je4R3HrH6UPF-_vQ@mail.gmail.com>
Message-ID: <29FBDB37-6BC3-47D9-9FFD-27D8BE0F280B@dartmouth.edu>

Hi Russ,

You should be fine with just replacing the sweet.war and  
institution.war files, as they will overwrite files in the sweet/ and  
institution/ folders. You could remove those folders to make sure it's  
a clean install (those folders will get re-created when you restart  
Tomcat anyways).

Hope that helps,

--sukie--

Sukdith "sukie" Punjasthitkul
Dartmouth College


On May 3, 2012, at 11:31 AM, Russel Ingram wrote:

> I don't see any upgrade instructions for SWEET or the search  
> application.
> Can I just replace the sweet.war and institution.war files?
>
> Russ
> ---
> Russel Ingram
> Associate Systems Administrator
> Institute for Systems Biology
> 401 Terry Ave N
> +1 206 732 2140
>
>
> On Thu, May 3, 2012 at 8:15 AM, Russel Ingram <
> Russel.Ingram at systemsbiology.org> wrote:
>
>> I don't think 1.6MS6.03 was available when I installed last week.  
>> I'll
>> download it and upgrade. Thanks.
>>
>> Russ
>> ---
>> Russel Ingram
>> Associate Systems Administrator
>> Institute for Systems Biology
>> 401 Terry Ave N
>> +1 206 732 2140
>>
>>
>> On Thu, May 3, 2012 at 8:13 AM, Bourges, Daniela <
>> Daniela_Bourges at hms.harvard.edu> wrote:
>>
>>> Can you also make sure you have the latest release, 1.6MS6.03?
>>>
>>> For the future, please be more specific about your particular  
>>> context so
>>> we can better assist you.
>>>
>>> Best
>>> Daniela
>>>
>>> Dr. Daniela Bourges-Waldegg
>>> System Architect, eagle-i @ Harvard University
>>>
>>> Daniela_Bourges at hms.harvard.edu
>>> skype: dbourgesw
>>> phone: 617-384-8891
>>>
>>> On May 3, 2012, at 11:08 , Russel Ingram wrote:
>>>
>>>> I named the anonymous user anonymous and set his password to  
>>>> anonymous
>>> to keep it simple. That's what's already in the whoami.xml file.
>>>>
>>>> Russ
>>>> ---
>>>> Russel Ingram
>>>> Associate Systems Administrator
>>>> Institute for Systems Biology
>>>> 401 Terry Ave N
>>>> +1 206 732 2140
>>>>
>>>>
>>>> On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <
>>> Daniela_Bourges at hms.harvard.edu> wrote:
>>>> Hi Russel,
>>>>
>>>> Please make sure that you have created your "anonymous" user in the
>>> repository, to be used by the search application. You can name it  
>>> e.g.
>>> "search", and it should have *no*  roles. Then edit the file  
>>> whoami.xml to
>>> reflect these credentials, in the following section:
>>>>
>>>> <!--
>>>> REQUIRED: username for anonymous access to the repository
>>>> -->
>>>> <anonUser>search</anonUser>
>>>> <!--
>>>> REQUIRED: password for anonymous access to the repository
>>>> -->
>>>> <anonPassword>xxxxx</anonPassword>
>>>>
>>>>
>>>>
>>>> Let me know how it goes.
>>>>
>>>> Cheers
>>>> Daniela
>>>>
>>>>
>>>> Dr. Daniela Bourges-Waldegg
>>>> System Architect, eagle-i @ Harvard University
>>>>
>>>> Daniela_Bourges at hms.harvard.edu
>>>> skype: dbourgesw
>>>> phone: 617-384-8891
>>>>
>>>> On May 2, 2012, at 16:49 , Russel Ingram wrote:
>>>>
>>>>> The facilities group at my institution has decided they'd like  
>>>>> to use
>>> eagle-i to track recourses here at ISB and I've been tasked with  
>>> getting it
>>> installed and working for them. I've been able to follow the  
>>> instructions
>>> here:
>>>>>
>>> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand 
>>>  here:
>>> https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto 
>>>  get the system installed, but getting it configured so that  
>>> everything
>>> works together like it's supposed to doesn't seem to be very well
>>> documented. I think I figured out that you have to configure  
>>> Apache to
>>> proxy requests for http:// and https:// to http://:8080 and https://8443respectively 
>>>  and that seems to make logins to the search application work,
>>> but whenever we click on one of the resources listed after logging  
>>> into the
>>> search app, it kicks us back to the login screen and we have to go  
>>> back to
>>> the base URL in order for our logins to work again. Is there  
>>> anyone that
>>> can help me figure out what I don't have configured right?
>>>>>
>>>>> Thanks,
>>>>> Russ
>>>>> ---
>>>>> Russel Ingram
>>>>> Associate Systems Administrator
>>>>> Institute for Systems Biology
>>>>> 401 Terry Ave N
>>>>> +1 206 732 2140
>>>>> _______________________________________________
>>>>> Eagle-i-admins mailing list
>>>>> Eagle-i-admins at open.med.harvard.edu
>>>>> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>> Dr. Daniela Bourges-Waldegg
>>> System Architect, eagle-i @ Harvard University
>>>
>>> Daniela_Bourges at hms.harvard.edu
>>> skype: dbourgesw
>>> phone: 617-384-8891
>>>
>>>
>>>
>>>
>>>
>>>
>>
> _______________________________________________
> Eagle-i-admins mailing list
> Eagle-i-admins at open.med.harvard.edu
> https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins



From Russel.Ingram at systemsbiology.org  Thu May  3 14:23:32 2012
From: Russel.Ingram at systemsbiology.org (Russel Ingram)
Date: Thu, 3 May 2012 11:23:32 -0700
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
In-Reply-To: <CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
References: <CAApyYO0Gc_AOyTKDtOteC6zwni_jX3J0rmsRYDLSp03hh5TZmA@mail.gmail.com>
	<BE01B602-EF15-4B50-A260-A2D893450FE6@hms.harvard.edu>
	<CAApyYO1Di=UtSxFCnegwf1_Rq4h3WJ10ntqAkFBgzm4PaFdxQQ@mail.gmail.com>
	<CC02DECC-1E47-4144-B931-755AAC6A4855@hms.harvard.edu>
Message-ID: <CAApyYO07W0AbzYt7doQDzh8v6YJz8VO-QFq1g-3Yt1a3-JZPPw@mail.gmail.com>

It looks like it might have been because I was running a slightly older
version of tomcat 6 than the main download page says is required. I saw the
requirements on the repository installation instructions, which just says
Tomcat 6 and thought we were ok. After re-installing with Tomcat 6.0.26, it
all seems to be working. Thanks.

Russ
---
Russel Ingram
Associate Systems Administrator
Institute for Systems Biology
401 Terry Ave N
+1 206 732 2140


On Thu, May 3, 2012 at 8:13 AM, Bourges, Daniela <
Daniela_Bourges at hms.harvard.edu> wrote:

> Can you also make sure you have the latest release, 1.6MS6.03?
>
> For the future, please be more specific about your particular context so
> we can better assist you.
>
> Best
> Daniela
>
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
>
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
>
> On May 3, 2012, at 11:08 , Russel Ingram wrote:
>
> > I named the anonymous user anonymous and set his password to anonymous
> to keep it simple. That's what's already in the whoami.xml file.
> >
> > Russ
> > ---
> > Russel Ingram
> > Associate Systems Administrator
> > Institute for Systems Biology
> > 401 Terry Ave N
> > +1 206 732 2140
> >
> >
> > On Thu, May 3, 2012 at 5:48 AM, Bourges, Daniela <
> Daniela_Bourges at hms.harvard.edu> wrote:
> > Hi Russel,
> >
> > Please make sure that you have created your "anonymous" user in the
> repository, to be used by the search application. You can name it e.g.
> "search", and it should have *no*  roles. Then edit the file whoami.xml to
> reflect these credentials, in the following section:
> >
> > <!--
> > REQUIRED: username for anonymous access to the repository
> > -->
> > <anonUser>search</anonUser>
> > <!--
> > REQUIRED: password for anonymous access to the repository
> > -->
> > <anonPassword>xxxxx</anonPassword>
> >
> >
> >
> > Let me know how it goes.
> >
> > Cheers
> > Daniela
> >
> >
> > Dr. Daniela Bourges-Waldegg
> > System Architect, eagle-i @ Harvard University
> >
> > Daniela_Bourges at hms.harvard.edu
> > skype: dbourgesw
> > phone: 617-384-8891
> >
> > On May 2, 2012, at 16:49 , Russel Ingram wrote:
> >
> > > The facilities group at my institution has decided they'd like to use
> eagle-i to track recourses here at ISB and I've been tasked with getting it
> installed and working for them. I've been able to follow the instructions
> here:
> > >
> https://open.med.harvard.edu/display/eaglei/Repository+Installation+and+Administrator+Guideand here:
> https://open.med.harvard.edu/display/eaglei/Application+Installation+Guideto get the system installed, but getting it configured so that everything
> works together like it's supposed to doesn't seem to be very well
> documented. I think I figured out that you have to configure Apache to
> proxy requests for http:// and https:// to http://:8080 and https://8443respectively and that seems to make logins to the search application work,
> but whenever we click on one of the resources listed after logging into the
> search app, it kicks us back to the login screen and we have to go back to
> the base URL in order for our logins to work again. Is there anyone that
> can help me figure out what I don't have configured right?
> > >
> > > Thanks,
> > > Russ
> > > ---
> > > Russel Ingram
> > > Associate Systems Administrator
> > > Institute for Systems Biology
> > > 401 Terry Ave N
> > > +1 206 732 2140
> > > _______________________________________________
> > > Eagle-i-admins mailing list
> > > Eagle-i-admins at open.med.harvard.edu
> > > https://open.med.harvard.edu/mailman/listinfo/eagle-i-admins
> >
> >
> >
> >
> >
> >
> >
> >
>
> Dr. Daniela Bourges-Waldegg
> System Architect, eagle-i @ Harvard University
>
> Daniela_Bourges at hms.harvard.edu
> skype: dbourgesw
> phone: 617-384-8891
>
>
>
>
>
>
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From Michael_Cherry at hms.harvard.edu  Thu May  3 14:24:57 2012
From: Michael_Cherry at hms.harvard.edu (Cherry, Michael)
Date: Thu, 3 May 2012 14:24:57 -0400
Subject: [Eagle-i-admins] Need assistance getting eagle-i running
	properly
Message-ID: <2D9A56628D03E943A293017B10EFD25CC4522E1CA6@ITCCRMAIL01.MED.HARVARD.EDU>


> I don't see any upgrade instructions for SWEET or the search application.
> Can I just replace the sweet.war and institution.war files?

Hi Russ,

Short answer: yes.

When we deploy a new release, we
1) shut down the app server (in our case, Tomcat 7)
2) delete both the application .wars and the exploded versions (created in the webapps root by Tomcat upon startup) 
3) drop in the new .wars
4) start Tomcat

- Mike Cherry
Release Operations Engineer
Center for Biomedical Informatics
Harvard Medical School